Pituophis catenifer annectens (San Diego gophersnake): 139320910
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Entry
139320910 CDS
T11059
Symbol
ERCC2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03022
Basal transcription factors
pcae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139320910 (ERCC2)
09124 Replication and repair
03420 Nucleotide excision repair
139320910 (ERCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcae03021
]
139320910 (ERCC2)
03036 Chromosome and associated proteins [BR:
pcae03036
]
139320910 (ERCC2)
03400 DNA repair and recombination proteins [BR:
pcae03400
]
139320910 (ERCC2)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139320910 (ERCC2)
Transcription machinery [BR:
pcae03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139320910 (ERCC2)
Chromosome and associated proteins [BR:
pcae03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
139320910 (ERCC2)
DNA repair and recombination proteins [BR:
pcae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139320910 (ERCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
139320910
NCBI-ProteinID:
XP_070805519
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVLFPHDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLALILAYQ
RAYPLEVTKLIYCSRTVPEIEKVIEELRKLVDFHEKQTGQKLPFLGLALSSRKNLCIHPE
VSSLRFGKEVDGKCFSLTASYIRAQHQQDGSLPSCCFFEEFDAHGRQVPLPYGVYNLDDL
KAYGQQKGWCPYFLARYSILHANIVVYSYHYLLDPKIADVVSKELAKKSVVVFDEAHNID
NVCIDSMGVNITRKILDRCQGNVATLQAAIQQIKETDAQKLKEEYQQLVQGLREANVARE
TDVYLANPVLPDEILQEAVPGNIRTAEHFVAFLKRLLEYLKSRLRVHHVVQESPPSFLKD
IFEKVCIERKPLRFCAERLRCLLRTLEIADISDFSPITLISNFATLVSTYSKGFTILIEP
FDDRTPTILNPILHFSCMDASIAIKPVFERFQTVIITSGTLSPLDMYPQILDFRPVTMAT
FTMTLARTCLCPMIVGRGNDQVTISSKFETREDIAVIRNYGNLLLEMSGVVPDGIVAFFT
SYQYMENIVASWYEQGILENIQRNKLIFIETQDGAETSVALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRNQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLLIFADKRFARADKRGKLPRWIQEHITDANLNLTLDEAVQVAKHF
LRQMAQPFRKEDQLGLSLLTLQQLQSEETLRRVREIAHQV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaacatcgacggcttgctggtgctcttcccccacgactacatctaccccgag
cagtactcctacatgctggagctgaagcggacgctggacgccaagggccacggggtgctg
gagatgccctcgggcaccgggaagaccatctccctcctggcgctcatcctggcctaccag
cgcgcctacccgctggaggtgaccaagctcatttactgctccaggaccgtcccggagatt
gagaaggtgattgaggagctgcggaagctggtggacttccacgagaagcagacgggacag
aagctgcccttcctgggcttggccctcagctccaggaagaacctctgcatccatcccgag
gtgagcagcctgcgcttcgggaaggaggtggacggcaagtgcttcagcctgactgcctcc
tacatccgggctcagcaccaacaggatggcagccttccctcttgctgcttctttgaggaa
ttcgatgcccacggtcgccaggtgcctcttccttacggcgtctataacctggatgacctg
aaggcctacggtcagcagaagggctggtgcccctacttccttgcccgctactcgatcctc
catgccaacattgtggtctacagttaccactatctcctcgatcccaaaattgcagacgtg
gtctccaaggagctggccaagaaatcagtggtggttttcgatgaggctcataatatcgac
aacgtctgcattgactccatgggggtcaacatcacaaggaagatcctggatcgctgccaa
gggaacgtggccacgctccaagctgccattcaacagatcaaggaaacagacgcgcagaag
ctgaaagaggagtatcagcagctggtgcagggattgcgggaggccaatgtcgcccgggaa
acagacgtctatttggccaacccggtgctgccggatgagatcctgcaggaggccgtgccg
ggcaacatccggacagcagagcacttcgtggctttcctaaaacgcctcttggagtatctg
aagtcccggctccgtgtccatcacgtggtccaggagagccccccgtccttcctgaaggac
atctttgagaaggtctgcatcgagcgaaagcccctccggttctgtgctgagcgactgcgt
tgcctccttcgcacgctggagatcgcggacatctccgacttctcgcctatcaccctcatc
tccaacttcgccactttggtcagcacttactccaagggattcaccatcctcattgagccc
tttgacgacaggacgcccaccatcctcaaccccatcctgcacttcagctgcatggatgcc
tcgatcgccatcaagcccgtctttgagcggttccagacggtcatcatcacctcaggaacc
ctttccccccttgacatgtacccccaaatcctggacttccggccggtgaccatggccact
ttcaccatgacccttgcccggacctgcctctgcccgatgattgtgggccgagggaatgac
caagtgaccatcagctccaagtttgaaacccgcgaggacattgccgtgatccgcaactat
ggcaacctcctcctggagatgtcaggcgtggtccctgatggcatcgtggccttcttcacc
agctaccagtatatggagaacatcgtggcctcctggtatgagcaggggatcctggagaac
attcagcggaacaagctcatcttcatcgagacgcaggatggagccgagacgagcgtggcc
ctggagaagtaccaggaggcctgcgagaacggccgaggggccatcctgctgtcggtggcc
aggggaaaggtctccgaagggatcgactttgttcaccactacgggagggccgtgatcatg
tttggcgtcccctatgtctacacccaaagccgaatcctgaaggcccggctggagtacctg
aggaaccagttccagatccgtgaaaatgacttcctaacgttcgacgccatgcggcacgcg
gcccagtgcgtcggacgggccattcgcggcaagacagactacggcctcttgatctttgcc
gacaagcgcttcgcccgggcagacaagcgagggaagcttcctcgctggatccaagaacac
atcactgacgccaacctgaacctaacgctggacgaggccgtgcaggtggccaagcacttc
ctgcgccagatggcccagcccttccgcaaggaagaccagctgggcctgtccctgctcacc
ttgcagcagctgcagtcggaggagaccttgcgcagagtgcgggagattgcccaccaggtg
tga
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