Pituophis catenifer annectens (San Diego gophersnake): 139320952
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Entry
139320952 CDS
T11059
Symbol
COL9A2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04510
Focal adhesion
pcae04512
ECM-receptor interaction
pcae04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139320952 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139320952 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
139320952 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pcae00535
]
139320952 (COL9A2)
Proteoglycans [BR:
pcae00535
]
Extracellular matrix (ECM) proteoglycans
Others
139320952 (COL9A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139320952
NCBI-ProteinID:
XP_070805613
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MARLLNLCFLLQSFVFSLSQLQGPPGEPGPRGPPGPPGVPGADGIDGDKGPPGAAGVPGA
KGAPGLPGPDGAPGKPGIDGLTGAKGEPGRVGRLGPKGQSGLPGPPGLPGPGFPGPPGPP
GQVGLPGEMGPLGLKGERGPDGPQGPPGPPGKPGPIGRIQGAEGSADFVCPTNCPPGLKG
PPGLQGLKGHRGRAGASGEPGRQGRLGPKGDVGLSGEQGIQGPPGPEGPRGHPGMAGPKG
EMGPQGYKGMTGSIGAVGPLGEDGPKGPPGQVGEKGEIGPRGFSGAEGEMGPKGTRGLPG
IDGKDGFPGVPGVKGSVGQPGLPGPLGHRGVAGLPGTPGSKGGPGAKGEPGTRGPSGLPG
PSGKIGEPGPPGAVGLQGIAGVKGDRGERGSTGPPGPQGKVGPKGDQGPPGIPGPQGLPG
VKGSKGFPGRSGSKGGIGNPGVEGLSGGKGQKGELGEPGPKGQPGIRGEPGFPGPPGDIG
APGVRGFPGPPGPRGPNGERGVPGMPGLRGAPGRDTGDQHIVDVVIKMLQEQLAELAVSA
KRETLGGSGMMGPPGPPGPPGPPGSQGPHGHPGSRGLPGILGAVGQIGNTGPKGKRGEKG
DQGEPGRGHQGMPGPPGIPGPPGQPGQALNGKHGERGVPGAPGEAGRAGLPGPSGLPGFC
EAVVCLGASASAQLTEVGSVKGPSY
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggctagattgctgaatctctgctttcttctccaaagctttgtcttctccttaagccag
ttgcaaggtccgccaggagaacctgggccacggggccccccaggtccacccggcgtgcca
ggagcagacggcattgatggcgataaaggtccacccggtgcagcaggtgttcctggggcc
aaaggagctccaggcctgccaggaccagatggagccccaggaaaacccggaatagatggc
ctcacgggagctaaaggagagccaggccgtgttggaagattaggtcccaaaggccagtct
ggacttcctggaccaccggggctcccaggacctggatttccaggacctcctggcccccca
ggtcaagttggacttcctggagaaatgggacctttgggacttaagggggaacgtggacca
gatggaccacaagggcctccaggacctcctggaaagccaggcccaattggtcgtatccaa
ggagccgaaggcagtgctgattttgtgtgtccaaccaactgcccacctggactcaaggga
cctccgggtttacaggggttgaagggacacagaggtcgagcaggagcctctggagagcct
ggaagacaaggccggctgggtccaaagggtgacgtgggcctgtctggagaacaaggcatt
cagggtcctcctggcccagaaggtcccagggggcatccaggaatggcaggaccaaaagga
gagatgggtcctcaaggttacaaaggcatgactgggagcattggagctgttggtcccctg
ggtgaagatggtcccaaggggcccccaggacaagttggagagaagggagaaattggtccc
cgtggtttcagtggtgctgagggcgaaatgggtcccaaaggaacacggggtcttcctggg
attgatggcaaagatggatttcctggcgttcctggggtgaagggaagtgtgggtcaacca
ggccttccagggcctttgggacacagaggagtggctggtttgccaggcactcctgggagc
aaaggtggtcctggagcgaagggcgaaccaggaacccgcggcccgtcaggcttacctggg
ccatctggaaaaattggagagccgggtccaccgggagcagtgggtctccaaggcattgct
ggtgtgaaaggagatcggggcgagagggggtctacgggacctccaggtccacagggaaaa
gtgggccctaaaggagaccaggggccccctggaattccagggccacagggactcccagga
gttaaaggcagcaagggcttcccgggaagaagtggatccaaaggcggcatcgggaatcct
ggtgttgaaggcctttctggaggaaaggggcagaagggtgaattgggggaacctggacca
aaggggcagccaggcatccgtggggagcctggttttcctggacctcctggagacatcgga
gcacctggagtcagaggtttcccaggacctcctggccctcgaggacctaatggggaacgt
ggtgtacctggaatgcctgggttgcgaggtgccccgggcagggacaccggagatcagcat
attgttgatgtcgtgatcaagatgctacaagaacaactggccgagttagctgtgagtgcg
aaaagagaaactttgggtggaagtggcatgatgggaccacccggccctccagggcctcct
ggaccacctggctcccaaggcccccatggacatcctggttcccgtggtcttccaggaatc
ctaggagctgttggacagataggcaacactggacccaaaggaaagaggggtgagaaagga
gaccagggagaacctggccgtggacatcaagggatgccagggcctccaggcataccaggt
ccccctggtcaacctggtcaagctctcaatggcaaacatggagagcgaggtgttccaggt
gctccaggagaagcaggacgtgctggtttacctgggccttctggcctccctgggttttgc
gaggcagtcgtctgccttggggcctctgcctcagctcagctaactgaagtcggttctgtc
aaaggaccttcgtactga
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