Pituophis catenifer annectens (San Diego gophersnake): 139321560
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Entry
139321560 CDS
T11059
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03082
ATP-dependent chromatin remodeling
pcae03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139321560 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
139321560 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pcae01009
]
139321560 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcae03021
]
139321560 (SMARCB1)
03036 Chromosome and associated proteins [BR:
pcae03036
]
139321560 (SMARCB1)
Protein phosphatases and associated proteins [BR:
pcae01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139321560 (SMARCB1)
Transcription machinery [BR:
pcae03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139321560 (SMARCB1)
SWI/SNF complex
139321560 (SMARCB1)
Chromosome and associated proteins [BR:
pcae03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139321560 (SMARCB1)
PBAF complex
139321560 (SMARCB1)
SWI/SNF complex
139321560 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
139321560
NCBI-ProteinID:
XP_070806404
LinkDB
All DBs
Position
Unknown
AA seq
398 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHESQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTY
LREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRLGRDKKRTFPLCFDDHDPAVIHEN
ASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIAS
AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS
ELGLGGEFVTTIAYSIRGQLSWHQKTYAFRSNSAGCGSPYRIENPLPTVEIAIRNTGDAD
QWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcccgtcaagttccagctggag
gaggacggcgacttctacatgatcggctccgaggtgggcaactacctgcggatgttccgc
ggctccctctacaagcgctacccgtcactctggaggcgcctggcgacggtggaggagcgc
aagaagatcgtcgcctcgtcccacgagtcgcagcggagccacagcccgagaagatatcat
gggtataccaccctggccaccagcgtgactctcttaaaagcttctgaagttgaagaaatc
ctggatggaaatgatgagaagtacaaagccgtctccatcagcactgaacctcccacctac
cttagggaacagaaggccaaaagaaacagccagtgggttccaactcttcccaatagctcc
catcatctggatgctgtgccttgctcaaccaccattaacagaaaccgcttgggccgagac
aagaagagaacgttcccactctgctttgatgaccatgacccagcagtgatccacgaaaat
gcctcacaaccagaggtgctggtcccaatccggctggacatggaaatcgatgggcagaaa
ctgagagacgcttttacgtggaatatgaatgaaaaactgatgactccagaaatgttttca
gagattctctgtgatgacttggatttgaatcccctcacttttgttcctgcgatcgcatct
gcaatccgacagcaaattgagtcctaccctaccgacagcatcctggaggaccagtcagat
cagcgggtcatcattaagctcaacattcatgtggggaacatctccttggtggaccagttt
gagtgggatatgtctgagaaggagaattcccctgagaagtttgccctgaagctgtgctca
gagcttggactgggtggtgagtttgtcaccaccatcgcttacagcatccgggggcagctg
agctggcatcagaagacgtacgccttcagatccaattctgctggatgtggcagtccatat
aggattgaaaaccccctgccgaccgtggagattgccattcgtaacactggggatgccgac
cagtggtgccctctgcttgaaaccctcactgatgcagaaatggagaagaagatccgagac
caagaccggaacacaaggcgcatgaggcgtttagcaaacacagctccagcctggtaa
DBGET
integrated database retrieval system
