KEGG   Pituophis catenifer annectens (San Diego gophersnake): 139321732
Entry
139321732         CDS       T11059                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X1
  KO
K10756  replication factor C subunit 3/5
Organism
pcae  Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03030  DNA replication
pcae03410  Base excision repair
pcae03420  Nucleotide excision repair
pcae03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    139321732 (RFC5)
   03410 Base excision repair
    139321732 (RFC5)
   03420 Nucleotide excision repair
    139321732 (RFC5)
   03430 Mismatch repair
    139321732 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcae03032]
    139321732 (RFC5)
   03036 Chromosome and associated proteins [BR:pcae03036]
    139321732 (RFC5)
   03400 DNA repair and recombination proteins [BR:pcae03400]
    139321732 (RFC5)
DNA replication proteins [BR:pcae03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    139321732 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    139321732 (RFC5)
Chromosome and associated proteins [BR:pcae03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    139321732 (RFC5)
DNA repair and recombination proteins [BR:pcae03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     139321732 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    139321732 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_11 AAA_22 AAA_lid_RFC1 AAA_24 AAA_16 AAA_assoc_2 RuvB_N AAA_14 DUF815 DEAD ResIII nSTAND_NTPase5 AAA_5 AAA_19 ATPase_2 TniB AAA_30 PhoH AAA_7 TIP49 nSTAND3 bpMoxR Thioredoxin_6 DNAX_ATPase_lid Gp44_lid AAA_3 NPHP3_N AAA_28
Other DBs
NCBI-GeneID: 139321732
NCBI-ProteinID: XP_070806671
LinkDB
Position
Unknown
AA seq 339 aa
MERSAEAAATTVAGRSANLPWVEKYRPQTLGDLISHEDILNTIQKFISEDRLPHLLLYGP
PGTGKTSTILACAKQLYKEREFGSMVLELNASDDRGIDIVRGPIMNFASTRTIFKRGFKL
VILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPEL
MVPRLKHVTEKENVDVSDDGMKALVTLSNGDMRRSLNILQSTYMAFGKVTEETVYTCTGQ
PLKSDIANILDWMLNLDFTSAYRNILELKTLKGLALQDILTEIHLFVHRVDFPTSVRIQL
LIKMADVEHRLAAGTNEKIQLGSLVAAFQVTRDLIAAEA
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggaacgttcggcggaggcagcggcgacgacggtggccgggaggagcgcgaacttacct
tgggtagagaagtaccggcctcagaccctcggggatctaatttctcatgaggacattctg
aataccatacagaagtttatcagcgaggaccgtttgcctcacctcctgctctatggacct
ccggggaccggcaagacgtctacgattctcgcttgtgctaaacagctttacaaagagaga
gaatttggctcaatggttttagagctgaatgcttctgacgaccgaggcattgatatcgtc
agagggcctatcatgaactttgccagcaccagaaccatcttcaagagaggttttaagctg
gtgattctggatgaagccgatgccatgacccaggatgcacaaaatgctctcaggcgtgtg
attgagaaattcactgagaatacccggttttgcctgatctgcaactacctctccaaaata
attccagctctacaatccagatgcaccaggttccggtttggcccgttgacgccagaactc
atggttcctcggttgaagcatgttaccgagaaggagaatgttgatgtcagcgatgacgga
atgaaagccttggtgacgctgtccaacggtgatatgcgcagatctctgaacatcttgcag
agcacgtacatggcttttggaaaagtgaccgaagagaccgtctacacttgcactgggcag
ccactcaagtctgatattgccaacatcctggactggatgctgaatctggacttcacttcc
gcctaccgcaacatcctggaactgaaaaccttgaagggcctggctttacaagacattcta
accgaaattcatttgtttgttcatcgagttgatttcccaacatctgtccggatccagctg
ctgatcaagatggcagatgtggaacaccgcctggccgcaggaacaaatgagaagatccaa
ctagggtctcttgtagctgccttccaggtcacgagagatctgattgcagccgaggcttga

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