Pituophis catenifer annectens (San Diego gophersnake): 139322640
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Entry
139322640 CDS
T11059
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03013
Nucleocytoplasmic transport
pcae03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139322640 (UPF3B)
03015 mRNA surveillance pathway
139322640 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139322640 (UPF3B)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139322640 (UPF3B)
mRNA cycle factors
P-body specific factors
139322640 (UPF3B)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF6980
Motif
Other DBs
NCBI-GeneID:
139322640
NCBI-ProteinID:
XP_070807898
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MKEDKENARPKEKRGGPLAPTGLGAAMAGADAKAGGEPDRLERPKDKKETLSKDETFFFK
VVIRRLPPSLTKEQLEEHLQPLPEHDYFEFFSNDSSLYPHMFSRAYINFKNQEDIVLFRD
RFDGYVFIDHKGLEYSAIVEFAPFQKAAKKKSKKKDAKAGTIDDDPEYKKFLESYSADDE
KLTSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEE
RRKWKEEERRKRKEAEKTKKVERCPEKERDKSKDEPKIKLLKKPEREERDFEKKEKAKRP
EKENLREDKTASPIGSVPAKRSDGEAKEEKIKKSIYPLHFEDECGKDYRERDYDRDRDYE
RIQRDKLRRQEEDRRRQKERFEKEKVFRRKEDDVKRERDSLREKGKRADFIEYVGNPEKT
EKGTKEDKRDDVSKKDRIRNKDRPAMQLYQPGARSRSRLSAYDESSPKSCDQGADKKPEC
EATNLKEEV
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgccaggccgaaggagaagcgcggagggcccctcgctccc
accggcctcggagcagccatggccggggcggacgccaaggcgggcggggagcctgaccgc
ctcgagaggcccaaagacaagaaagagacgctcagtaaggatgaaacatttttctttaag
gtagtgattcgacgccttcctccgagcttgaccaaggaacaacttgaagaacatctccag
ccgttgccagagcacgattattttgaattcttttcaaatgactctagtttgtatcctcac
atgttttccagagcatacatcaactttaaaaaccaagaagacatagttctgttcagggat
cgctttgatggttatgtttttattgatcacaaaggtctcgaatattccgccatcgtggaa
tttgctccgtttcaaaaagctgccaaaaagaagagtaagaaaaaggatgccaaagctgga
accattgatgatgatccagaatataagaagtttttagaaagctacagtgctgatgatgaa
aaattaacatctactcccgagactttattagaagaaatagaggcaagaaataaagaatta
atagccaaaaagacaactccgctgttgaacttcctgaagaataagcagaggcttagagaa
gagaaacgagaggaaaggaggaggcgggaactagagaggaaaagacaaagagaagaagaa
agaaggaagtggaaagaagaagaaagaaggaagcgaaaagaagctgaaaaaacaaagaaa
gtggaaaggtgtccagagaaggaaagggacaaatcgaaggatgaaccaaagattaagcta
cttaagaagccagaaagagaggaaagagattttgaaaaaaaggaaaaggccaagagaccg
gagaaagaaaatctgagggaggacaagaccgccagcccaattggcagcgtgccagccaag
cgctccgatggcgaagctaaagaggaaaagataaaaaaatccatctacccactgcatttt
gaagacgagtgcgggaaagactaccgagaaagagactacgaccgcgatagagactacgag
agaatccagcgggataaactccggcgccaagaggaagaccggcggcggcagaaagaacgc
ttcgagaaagagaaagtgttccggaggaaagaggacgacgtaaaaagggaacgagactcc
ttgcgagaaaaagggaaaagagccgacttcatagaatacgtgggcaacccagagaaaact
gagaaggggaccaaggaggacaaaagagacgatgtgtccaagaaagaccggattcggaac
aaggaccggccagccatgcaactctaccaacccggagcccggagccgaagccgtttatcc
gcgtacgacgaaagctctcccaagtcctgcgaccaaggagcagataaaaagccggagtgt
gaggctactaacttgaaagaagaggtgtga
DBGET
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