Pituophis catenifer annectens (San Diego gophersnake): 139322811
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Entry
139322811 CDS
T11059
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03013
Nucleocytoplasmic transport
pcae03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139322811 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
139322811 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139322811 (THOC2)
03041 Spliceosome [BR:
pcae03041
]
139322811 (THOC2)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
139322811 (THOC2)
Spliceosome [BR:
pcae03041
]
Complex C
Other components
EJC/TREX
139322811 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139322811 (THOC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
139322811
NCBI-ProteinID:
XP_070808152
LinkDB
All DBs
Position
Unknown
AA seq
1645 aa
AA seq
DB search
MRGSLSRRASRGRSPPSPLTSQGPSSFWHPGSPRHTGKMAAATSAMVVVAAALPAEWIRN
WEKSGKSEFLQLCRALSENATFRGVQQALYELAYHVIKGNLKHDQASNVLNDIIEFRDDM
PSILADVFCILDIETSCLEEKSKRDQFMQLVLACLNLVSDTILKERLDPETLESLGLIKQ
SQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSELILENIKSLI
GCFNLDPNRVLDIILEVYECRPEYDEFFVPLIESYMYMCEPQTLCHILGFKFKFYQEPNG
ETPVSLYRVAAILLQHNLIDLEDLYVHLLPSDHAILEEHKREIGEAKLIVRKLTMVVLSS
EKTEEKEKEKEKEEEKMEKPPDNQKLGLLEAMLKIGDWQHAQSIMDQMPPFYATSHKPIA
LALCQLLHVMIEPLYRRVGVLKGAKGTPVPPLQNKRAPKPVEHFEDLRKEVFNMLCYLGP
HLSHDPILFAKVLRLGKAFMKEYQLDGNKQEDREKMEILFSCLLSITDQVLLPSLSLMDC
NACMSEELWGMFKTFPYQHRYRLYGQWKNETYNSHPLLVKVKAQIIDRAKYIMKRLTKEN
VKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEAL
ANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLLQYVANQLKAGKSFDLLILK
EVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLAL
PLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASNLSTEDYIKRVPSI
DVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQQKVHKYITSCELVMAPV
HDAVISLHLPKVWDDISPQFYATFWSLTMYDLAVPRGSYEREVNKLKVQMKAIDDNQDMP
PNKKKKEKERCTALQDKLLEEEKKQLDHVERVLQRLKLEKDNWLLAKSTKNETITKFLQL
CIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRVFSDIIYTVASCTENEASRYG
RFLCCMLDTVTQWHSDKSVYEKECGNYPGFITVLRSSGYDAVNKADQLDYENFRHVVHKW
HYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVVNLGQALERRVRKIYEEEKEKRP
DLYALAMGYSGQLKSRKMVPENDFHQKDLPTRNAVPTMVQNGPGGAGLPPLTINAAKLEE
STAEETDKLKEKSQGAVKVVSKATNATPKVIASNGNTSKLVKEKEDKEKCGKEKEKEKKE
KVPAGTPEAKLLGKDGKDKPKEERANKEEKAREAKEKTPKADKEKEKIKREEKPFKEEKS
KIIVTNAESKSMAEKEREKEPSREREVAKEMKSKEVIRGGGGGGGGGGGGGGGEKIPIAG
SLKSSVPRSETSDSEREQKRRKIDTHSSPSHSSSVKDNLSELKDSAVKHYVNHSAPALSK
SKEREVDKKDLDKSRERSREREKKDEKERKDRKRDHSNNDREVPQDSAKRRKEENGTTGS
SKHSKSESPSNSPPRSNEKEKEKNKSKSSSKEKSDSIKVEKMEKSSSGSKKESRHDKEKP
EKKEKRDSTGNKEEKKHHKSSDKHR
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atgcggggctcgctttcccggcgtgcctcgcgcggccgttctccgccgtcccctctgacc
tcgcagggcccgtcgtcgttctggcatccgggctctccgcgccacacggggaaaatggcg
gcggcgacatccgcgatggtggtggtggcggcggcgctcccggccgaatggatccgcaac
tgggagaaatccggcaagagcgagttcttgcagctgtgtcgcgcactttctgaaaatgca
acttttagaggtgtccagcaggccctctatgagcttgcgtatcacgttatcaagggaaat
ctaaagcatgaccaagcatcaaatgttcttaatgatattatagaatttcgcgatgatatg
ccttccattctggctgatgtattctgcatattagacatcgaaaccagttgtttagaagag
aagagcaaaagagaccagttcatgcagctggtgttggcttgtttgaacctggtttccgat
actatattaaaagagcgtttggatccagaaactctggaatcattagggcttatcaagcag
tcccagcagtttaatcagaaatctgtgaaaataaagacaaaacttttttataagcaacag
aaatttaatttattaagagaagagaacgaaggctatgcaaaactgattgctgaactggga
caagatttatctggaaatatcactagtgaattgatcctggaaaacattaaatctttaata
ggatgttttaacctggatcctaaccgagtgttggatattatcttggaagtctacgaatgt
cgaccagaatatgatgaattttttgtacctttgatagagtcgtatatgtatatgtgtgaa
cctcaaacactctgccatatacttggattcaaattcaagttttatcaggaaccaaatgga
gagaccccggtctctttgtacagagtcgctgcaatccttttacaacacaacttaatagat
ctggaagatctttatgtgcatctcctgccatccgaccacgctatcctcgaggaacacaaa
cgggaaatcggggaggcgaaactaatcgtacggaaacttaccatggttgtgctctcgtcc
gaaaagacggaagagaaagagaaagaaaaggagaaggaagaggagaaaatggaaaagcca
ccagataaccagaaactgggtttattagaagccatgttaaaaattggtgattggcaacat
gcgcaaagcattatggaccagatgcctccgttttacgcaacttcacacaaacccatcgct
ctcgctctttgccagcttctccatgtgatgattgagcccctctatcgaagagtcggggtc
ctcaaaggtgccaaaggaaccccagtcccccctttgcaaaacaagagagccccaaagcca
gtcgaacattttgaagacttaaggaaagaagtgttcaacatgctttgctatctcggcccg
catctctcccacgatcccattctcttcgcaaaagtcttgcgccttgggaaagctttcatg
aaagagtaccaattggacggaaacaaacaagaggacagagagaaaatggagatattattc
agctgcttgcttagtatcactgaccaggttctgcttccttctctttccctgatggactgt
aacgcatgcatgtctgaggaactctgggggatgtttaaaacatttccataccagcaccgg
tatcgtctctacggccagtggaagaacgaaacatacaatagccatccactgctagtgaaa
gttaaagctcagataattgaccgagccaaatatataatgaagcgtttaacgaaggagaac
gtaaagccttctggaagacaaattgggaaactgagtcacagcaacccaaccattttattt
gactatattttgtcccagatccagaaatacgataacctaataactccagttgttgattca
ttgaaatacctcacttcactaaactacgatgttttggcttattgcataattgaagcattg
gcaaatcccgagaaggagaggatgaagcacgacgacactacaatttccagttggcttcag
agcttagcgagtttttgtggtgctgtttttcgaaaatacccaatagaacttgccggactc
ctccagtatgtggcaaatcaactcaaggcaggaaaaagttttgacctcctcattttgaaa
gaagtggtacaaaaaatggccggaattgaaatcaccgaagaaatgaccatggaacagcta
gaagccatgactggcggggagcagctgaaggcagagggaggatatttcggtcagatcagg
aacacgaagaaatcttctcagagattaaaagatgcacttctggaccacgatctcgccctc
ccgctgtgtcttctcatggctcagcagcgcaacggcgtcatctttcaagaaggaggggag
aaacatttgaagctggtggggaagctgtacgatcagtgccacgacactttggtacaattt
ggtggatttctggcgtctaatttaagcacagaggactatattaagcgagtgccttctatc
gacgtcctctgtaatgaatttcacactcctcacgacgctgctttcttcctttcaagacct
atgtacgcgcaccacatttcgtcaaagtacgatgagttgaagaaagcggaaaaggggaat
aagcagcagcagaaagtccacaaatacatcacgtcttgtgagctggtgatggcgcctgtt
cacgacgcagtgatctccttgcacctcccgaaggtctgggatgatatcagtccccagttc
tatgccaccttctggtccctgaccatgtacgaccttgcggtgccccggggtagctacgaa
cgggaagtcaacaaactcaaagtccagatgaaagccatcgacgacaatcaagacatgcct
cccaataaaaagaagaaagagaaagaacgctgtacagcccttcaggataaacttctggaa
gaggaaaagaagcagttggatcacgtggaaagggtgttgcaaaggctgaagcttgaaaag
gacaactggcttcttgcgaagtcgacgaaaaacgagaccataaccaagtttctgcaactg
tgtatatttcctcgctgtatcttttctgccatcgatgctgtttactgtgctcgctttgta
gaactggtgcatcaacagaaaacacccaatttttccacactgctttgttatgaccgagtc
ttctccgatatcatctacacagtagccagctgcactgaaaacgaagccagtcgatacggt
agatttttgtgctgcatgctagataccgtaacccagtggcacagcgacaaaagcgtatat
gaaaaggaatgtggtaattatccgggcttcatcactgtactgcgatccagtggttacgat
gctgtgaacaaagccgaccagttagactacgaaaatttccgacacgtggtacacaaatgg
cattataaattaaccaaggcgtccgtacactgtctggaaaccggggaatatacacatatc
agaaatatcctgattgtgctgaccaaaattttgccgtggtatccaaaggtggtgaatctg
ggccaggccttggaaagaagagtccgtaagatttacgaagaagagaaagaaaagagacca
gacctatatgcgttagccatgggctattctggccaactgaaaagtagaaaaatggttcct
gaaaacgatttccatcagaaggacctcccgacccggaacgcagtgcccaccatggttcaa
aacgggccagggggagcagggctgcctccgctcacgataaacgcagcgaaattggaagaa
agcaccgctgaggagacagataagttgaaggagaagtcacagggcgcagttaaagtggtc
agcaaagccaccaacgcgacgcccaaggtgatcgccagcaatggaaacaccagcaaactt
gtcaaagaaaaagaggacaaagagaaatgcgggaaggagaaagagaaggagaagaaagag
aaagtccccgctggcactcctgaagctaaattactcggaaaagacgggaaggataagcca
aaggaagagagggcgaacaaagaagagaaggcacgagaagctaaggaaaagacaccgaag
gctgacaaagagaaggagaaaatcaagagagaagagaaaccattcaaagaggaaaaatcc
aagattattgtgaccaacgctgagtccaaatcaatggcggaaaaggagagagagaaggag
ccatcaagagagagagaagtggccaaggagatgaaatccaaggaagtcattagaggagga
ggaggaggaggaggcgggggaggaggaggaggaggaggagagaagattccaattgctggg
tccttgaagtcatctgttccccggtcagaaacttcagattccgaaagggaacaaaaacgt
cgcaaaatagatacccattcttctccatcacattcctcaagtgtaaaggacaacctcagc
gaactcaaggattccgcagttaagcactacgttaaccactccgctccggcattgtctaaa
agtaaggagagagaagtagacaagaaagatttggacaaatcaagggaaagatcccgagag
agagaaaagaaagatgaaaaggaaaggaaagaccgaaaaagggatcattcgaacaatgac
cgcgaagttccccaagattcagccaagcgtcggaaagaggaaaatggaacaactggttcc
tccaagcacagtaagagtgaaagtccttccaactccccccctcgttcaaatgagaaggag
aaagagaagaacaagtcaaaatcttcaagcaaggagaaaagcgattccatcaaagttgaa
aagatggagaaaagctcttccggaagcaaaaaggagtccaggcacgataaagaaaaacca
gagaagaaagaaaaacgggatagtactgggaacaaagaagaaaagaaacaccataaatcg
tcagacaagcacagataa
DBGET
integrated database retrieval system
