Pituophis catenifer annectens (San Diego gophersnake): 139322871
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Entry
139322871 CDS
T11059
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04382
Cornified envelope formation
pcae04510
Focal adhesion
pcae04512
ECM-receptor interaction
pcae04518
Integrin signaling
pcae04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139322871 (COL4A6)
04518 Integrin signaling
139322871 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139322871 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
139322871 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139322871 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcae04147
]
139322871 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
pcae00536
]
139322871 (COL4A6)
Exosome [BR:
pcae04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139322871 (COL4A6)
Glycosaminoglycan binding proteins [BR:
pcae00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139322871 (COL4A6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139322871
NCBI-ProteinID:
XP_070808221
LinkDB
All DBs
Position
Unknown
AA seq
1803 aa
AA seq
DB search
MFAGAPVLLIALCLAAHPVHGGGKKFYHGICGGRDCTGGCKCFPEKGARGQPGPIGNQGS
MGIEGFTGPEGVRGLKGERGVTGPPGAAGMKGDKGPVGVPGFPGIYGVPGHPGQPGSRGL
PGLDGCNGTIGSPGISGSDGFPGPQGPPGRPGPKGPKGEPVYAPGIFKGVKGERGLPGLD
GAIGPKGFPGRSGPAGPIGLPGFPGPPGFPGLPGSVGSSGLVFHGEIGEKGDVGLPGPAG
PPSSTGTEEFVGLSKGQRGAKGVPGVKGIPGPPGVPGRPGFWSFGEKGEKGVPGLPGPRG
DTGPRGSYGNVGRKGVLGESGYPGWDGSPGGKGEFGDVGPPGPSLIVDINGAVISGPPGD
PGTPGTPGPRGDEGNIGLPGFPGQSGRPPSFPGLPGSTGVPGIPGFRGDRGDPGRTTVGS
PGLPGKDGDPGLPGAPGLPGASDIIHPAGTIFSGEPGEPGIPGPRGPPGIFGLKGYKGNG
GDCACDGGITRIGLPGESGSPGQPGRQGDIGPKGSSGDLGDGILGPPGPPGFLGQSGLPG
LKGQKGEPSSASGRGPRGDPGNIGLRGPSGQPGTPGRDGIPGVPGQRGLAGDDGFGFPGD
KGFPGLPGTRGKYGDIGLPGIGFPGPNGRFGPTGDPGISGIPGQPGPPGPPGDCCCGEEV
GNGDLDAQGGESVPCIIPGLIGPPGLPGPSGFPGSKGSKGFPGFPGQPGLNGLKGEPGIP
GLARFPGMPGFPGPRGDPGSKGRQGVDGVDGLPGPEGCPGLVGPNGSPGDVFGAEPGSQG
EPGLPGLPGDNGFPGDFGFPGTPGLDGKPGLSGRKGGRGEPGLPGFDGLQGPPGPGGPFG
IKGKPGPAGTIGLPGSQGMDCFILDEGSPYHGRFAPQPFILIHILQCHPVIFLSNQKHVP
KAAKPTFEYYMRRVLHDVYPTYTCSFVIRDFPMAQGCHLWKNVVVMVWVLNHSGLPGTKG
PRGDAGSPGPAGMKGIPGLDGLPGRPGEQGLPGPPGLWGPEGTPGFPGSKGEKGSVGMAG
FPGMPGPPGVPGVDGLKGTFGAPGRNGNPGFSGLPGLKGDRGVRGPPGPPIFRPPDLALR
FKGNRGDPGLVGDRGFPGPRGEKGAPGIRGQPGLPGRAGSPAREKGLPGDAGFPGTFGSP
GLLGQKGSGGISGFPGMPGGSGAEGIPGFPGSPGITGLRGPKGDRGESRGIPGGVGAKGQ
RGDRGLPGITGVQGIKGDPGYPGGLGLKGQKGSPGNPGQEGPRGFPGSGASRGNPGFPGN
PGQRGAPGFPGSPGTAGQKGFPGFPGLTGLNGLPGTKGSPGKQGLSENGLPGSAGIPGVK
GQRGDPGFQAGAPGLRGLKGPAGEMGLPGTQGFTGVRGPPGISVPSRVPGKPGDAGRPGE
DGLPGLQGPSGPPGPPGPAFNQGDRGNPGPTGPSGFPGLKGNAGIPGFSGVPGASGFKGF
RGDPGFMGMPGKDGPLGDPGFPGPKGKAGLPGFPGLQGAPGLTQPPKEVRVPPGLPGLPG
NNGNPGLNGDPGFQGQTGPQGPKGKAGIPGLVGFNGLPGPSGVVGDPGSPGTPGLPGFEG
RAGNPGLAGLPGMPGRSVGVGYTLVKHSQSDQIPPCPVGMNKLWEGYSLLYVEGQEKSHN
QDLGFAGSCLPRFSTMPFIYCNIDEVCYYASRNDKSYWLSTTAPIPMMPVSSYQIAQYIS
RCSVCEAPSQAVAVHSQDITIPQCPEGWRSLWIGYSFLMHTAAEGGGQSLVSPGSCLEDF
RATPFIECNGARGTCHYFSNKYSFWLTTVEATHQFADSPISETLKAGQLRTRVGRCQVCM
KNL
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccggggcgcccgtgttgctgatcgccctgtgcctggcagcgcatcccgtccac
gggggtggaaagaaattttatcatggaatctgtgggggtcgcgattgtacaggcggctgc
aagtgcttccccgagaaaggggctcggggtcaaccaggaccaatcgggaaccaaggatca
atgggcattgaaggctttactggaccagagggagtgagaggactgaaaggagagagaggt
gtaacaggacctccaggtgcagctggaatgaaaggagacaagggcccagtgggtgttcct
ggattccctggaatttatggagttccgggacacccaggtcagccaggatccagaggtctt
cctggtttagatggctgtaatggtaccattggaagtcctggtatctctggatcagatgga
ttccctggtccccaaggaccaccgggtcggcctggtcctaaaggccccaaaggtgaacct
gtctatgccccagggatttttaaaggagtgaagggagaaagaggtcttcctgggctggat
ggtgctattggacctaaaggttttccaggtcgatcaggccctgctggtcccatcgggcta
cctggatttccgggacccccaggcttcccaggactcccaggatctgtgggtagtagcggt
ctagttttccatggagaaataggagaaaaaggagatgtggggctgccaggaccagcggga
cctccatcttccacagggacagaagaatttgttggattgtccaaaggacagcgaggagca
aagggagttcctggggtcaaaggaattccaggcccaccaggagttcctggacgtccgggt
ttctggagctttggagaaaagggagaaaaaggtgtccccggtttaccaggacccagagga
gacacgggaccgaggggatcttacggaaacgtaggcagaaagggagttctgggcgaatca
ggatatcctggttgggatggctctccaggcggaaagggtgaatttggcgatgtgggtcca
ccaggcccttcattaattgttgacataaatggtgctgtcatatcaggtccccctggagac
cctggcacaccaggaacccctggacctagaggagatgagggaaatataggtttgccagga
tttcctgggcaatcaggacgtcctccaagctttccaggtctcccaggttcaacaggagtc
ccagggatcccaggatttagaggtgatcgaggagacccaggaaggactacagttggatct
ccaggcctacctgggaaagatggagatccagggttacccggagctccagggttaccaggt
gcttcagatataatacacccagcaggtacaatctttagtggagaacctggggagccaggt
atccctggaccaaggggacccccaggaatcttcggcttaaaagggtataaagggaacggt
ggtgattgtgcctgtgatggaggaatcacaagaattggcttgccaggagagtcagggagc
cctggtcaacctggcagacaaggtgatattggaccaaaaggatcctcgggggatctagga
gatggtatactaggtccccctggaccaccaggcttcctaggtcaatctggtcttccaggc
cttaaaggacaaaaaggggaaccatcttcagcctcaggaagaggacctcgaggagatcca
gggaatattggactcaggggtccttcggggcaacctggaactcctggtagagatggcatt
ccaggtgtcccaggtcaacgtggtcttgcgggtgatgatggatttggcttcccaggggac
aaaggtttccctggattacctggcacaagagggaagtatggtgacattggcctacctggc
attggtttcccggggccaaatggacgttttggacctacaggtgatccagggatcagtggc
attccaggacaacctggacctcctgggccaccaggtgattgctgctgcggtgaggaggtt
ggtaatggagacttagacgctcagggaggagaaagtgtgccctgcataatccctggactc
attggtccacctggacttccgggaccttcagggtttccaggttccaagggtagcaaagga
tttcctggttttccagggcagccaggtttaaatggcttaaaaggagaaccgggcataccc
gggttggctcgattcccaggaatgccagggtttcctggccctcgtggagatcctggttca
aaaggacggcaaggagttgatggggtcgatggactgcctggtccagaaggctgtcctggt
ttggttggcccaaatggatcccctggtgacgtgtttggggctgaaccagggtcccaagga
gaacctggcttacctggcttaccaggagataatggctttcctggagattttggctttcct
ggaacaccaggtttggatggaaagcctggcctgtcaggtagaaaaggaggccgtggggag
ccgggtcttccaggctttgatggactgcaaggaccgccaggaccaggaggtccatttggc
atcaaaggaaaaccaggcccggctggaacaattggcctcccgggatcacaaggtatggat
tgtttcatcctggatgaaggatcaccatatcatggaagatttgcaccccaaccatttatt
ctcattcatattctccagtgccatcctgtgatcttcctgagcaaccagaaacacgtccca
aaggctgccaagcctacatttgaatattatatgcgccgtgtcctccatgacgtttacccc
acatatacatgttcttttgtcatacgggattttccgatggcgcagggatgtcatctttgg
aagaacgtcgtggtgatggtttgggttttgaaccattcaggacttcctggaacaaaagga
ccaagaggagatgctggttcaccaggtcccgctggcatgaaagggatcccaggtcttgat
ggcctgccaggacggccgggagaacaaggattgcctggacctccaggtctctggggccca
gaaggaactccaggttttccaggctcaaaaggtgaaaagggctcagtgggcatggccggt
tttcctgggatgccggggccacctggggtccctggcgtggatggcctgaaaggaacgttt
ggtgcaccaggaagaaatggaaaccctggattttctggcttgcctggcctcaaaggagac
agaggtgtccgtggtcctcctgggcctcccattttcagacccccagatctggccctcaga
ttcaaagggaaccgaggagatcctggcttggtgggggacagaggatttccagggccaaga
ggagaaaaaggagcccccggtatccgggggcagcctgggcttccagggagagctggatca
ccagctagagagaaaggactgccaggagacgcaggttttccaggaacgtttggttctcct
gggctattgggacaaaagggatctggtggcatctcagggtttcctggaatgcctggggga
agtggtgctgaaggaattccaggcttccctggctccccaggaattaccggattgcgtggt
ccaaaaggtgacagaggagaatcccgaggaatcccaggtggcgtgggagctaagggccag
cgaggggaccgagggcttccaggtataacaggtgtccaaggaataaaaggtgacccagga
tatccaggaggtcttggactaaaaggacagaagggttcaccaggtaaccctggacaagaa
ggaccacgaggcttccctggatctggcgcttcaaggggcaacccaggttttccaggtaat
cctgggcaacgtggagctccaggatttcctggatctcctggcactgcaggacaaaaagga
ttcccaggattcccaggactgactggcctaaatggtttaccgggcaccaaaggttctccc
ggaaaacaaggcctgagtgaaaatggactacctggatcggcaggaattccaggtgtcaaa
ggtcaacgaggggaccctggtttccaggctggagctcctggccttcgtggactaaaagga
cctgcaggagaaatgggtcttcctggaacccaaggtttcactggtgtgcgaggcccccct
ggcatctctgtgccttcaagggttcctgggaagcctggtgatgcgggacgtcctggagaa
gatgggctgccaggcttacaaggaccttctgggccaccagggccaccgggcccagccttc
aatcaaggtgatcgaggtaacccaggccccaccggtccttcgggcttcccaggcctcaaa
ggcaatgcaggcatccctggatttagtggagtccctggtgcatcaggtttcaaaggattc
agaggggatccaggtttcatgggaatgcctgggaaagatggaccactgggtgatccaggt
ttccctgggccaaaaggcaaagcaggccttccaggttttcctgggctgcaaggagctcca
ggcctaacccaaccaccaaaagaagtcagagttcctcctggattacctggattgcctgga
aataatggcaaccctggtttaaatggagaccctggcttccaggggcaaactggaccacaa
ggtccaaaaggaaaagcaggcatacctggcctggtgggatttaatggtttaccaggtcct
tctggtgtggtaggagacccgggttctccaggaactccaggactaccaggatttgaaggg
cgtgctgggaatccaggtctggctgggctgcccgggatgccaggtcgtagcgttggggtt
ggctataccttggtgaaacatagccagtcggaccagatcccaccctgtccggtgggcatg
aacaaactctgggaaggttacagtttgctatatgtggagggccaggagaagtcccacaat
caagatctgggttttgctggctcctgcctgcctcgcttcagcaccatgccttttatttat
tgcaacatcgacgaagtgtgctactacgccagccgcaatgataaatcctattggctttcc
accaccgctccgatacccatgatgcccgtcagcagctaccaaatcgcccaatacatcagt
cgctgctcggtgtgcgaagctccatcccaagctgtggctgtccacagccaggacatcacc
atcccacaatgtcccgaaggctggcggagtctctggattggctactccttcctcatgcac
acggctgccgaaggcggtggccagtccctggtctctcccggatcctgcctggaggacttc
cgtgccacacctttcattgagtgcaacggtgcccgaggaacatgccattacttttccaac
aagtacagcttttggctgaccacggtggaggcaacccatcagtttgctgactctcccatc
tccgaaacgctgaaagcgggccagctccggacacgggtgggacggtgccaagtctgcatg
aaaaatttgtag
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integrated database retrieval system
