Pituophis catenifer annectens (San Diego gophersnake): 139323541
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Entry
139323541 CDS
T11059
Symbol
UTP4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139323541 (UTP4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcae03009
]
139323541 (UTP4)
Ribosome biogenesis [BR:
pcae03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
139323541 (UTP4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
ANAPC4_WD40
Beta-prop_EML
EIF3I
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_TEP1_2nd
PROPPIN
Beta-prop_IFT140_1st
PQQ_2
Frtz
Motif
Other DBs
NCBI-GeneID:
139323541
NCBI-ProteinID:
XP_070809039
LinkDB
All DBs
Position
Unknown
AA seq
713 aa
AA seq
DB search
MGEFQVHRARLFAFVPSGVRCLAAPGARPPRRRLAAARLDGAVELYDLQANGAQEKVGGR
RGEGAPRGPLPGRPPRRCCLPQVIPGHEARAPEALCWAAGERLFGAGLGGAVLEYDLQRL
RLKGSLDAFGGPLWSMAADPTGARLAVGCEDGSVKLFRVESDGIEFERQLDRQKERILSL
SWHPSGTKIAAGSIDCFYIFDIESGHTSQRILVEGRLQGPSSQKCLVWGLAFLSDGTVVS
VDSAGKVQFWDSATGTLLSKHPISKAAVLSVAVAEAEDSMVVGTSEGTVYQFQLLPVRLG
SSEHQWVRTRPFRHHTHDVRTVAHTATAFISGGLDGQLVIRPLMEKVDSKSYDAALRTIS
FPHRCLVSCARTARLLLFQYPQHLELWQLGTTNFSGRPGEVLPVSCPPQNLLQLKAKGPE
HIRSSCLSPCGVWIAYSTASRFCLHRAQLFSDHISINRVRKTPRLNGSAHHLLFSCDSTK
LFLASDRGCVHVLSLLQSGICRHLYTLRPNSETLEAVHQLAVSADGRWLCAAGGDREICI
YNLENTKLHCTVPPCECPVTAMAIHPLTNNLIIAHSDQQVFEFSIKERSYTPWSRKLQQL
GLHKDWLERDTPITHIAFRPRHPSHVLLHDTYMFCILDMSLPLHEDSAASKKPEPHVKTI
QRGRGRAFKICKKFQPLLFVDFLDDNSLVVMERPLMDIKAQLPPPIYQKKFGT
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagttccaggtgcaccgcgcgcggctcttcgccttcgtgccgtccggggtccgc
tgcctggccgcccccggcgcccgcccgccccgccgccgcctggccgccgcccgcctcgac
ggcgccgtggagctctacgacctgcaggccaacggcgcccaggagaaggtgggcgggcgg
aggggcgagggggctccgcggggtccgctgcccggccggcctccccgacgctgctgtctc
ccgcaggtgatcccgggccacgaggcgcgcgccccggaggcgctgtgctgggcggcgggc
gagcggctgttcggcgccgggctgggcggggcggtgctggagtacgacctgcagcggctg
cgcctcaagggctcgctcgacgccttcggggggcccctctggagcatggcggcagacccc
accggcgcccggctggcggtgggctgcgaggacggctccgtcaagctcttccgagtggag
tcggatgggatcgaatttgaaaggcagctggaccggcagaaagaacgcatcctctctctg
tcctggcatccctctgggaccaagatcgcagctggctccatcgactgcttttatatcttt
gacattgaatctgggcacaccagtcagcggatactggtagaaggacgtttgcaaggcccc
tccagccagaaatgcctggtgtggggcctggccttcctttcagatggcacggtggtcagc
gtggattctgctggaaaagtgcagttctgggattcggcgactggcactctgctctctaag
catcccatcagcaaagctgcagtgctttccgtggccgtggctgaggcagaagatagcatg
gttgttggcacatcggaggggacagtatatcagttccagctgctaccggtgaggctgggc
agctctgagcaccagtgggtgcggaccagaccctttcggcatcacactcacgatgtgcgg
acggtggcacatactgccacagccttcatctctggagggctggatgggcaacttgtgatc
cgacccctgatggagaaggtggactccaagtcctatgatgctgccctccgcacgatcagc
ttcccccacaggtgcctcgtctcctgtgccaggacagcccggctcctcctcttccagtac
ccccagcacctggagctctggcagcttggcaccacaaacttctctggaaggcctggtgag
gtcctgccggtgtcctgtcccccccagaacctgctccaactgaaggccaagggcccggag
cacatccgcagcagctgcctctctccgtgtggcgtctggattgcctattccacagctagc
aggttctgcctgcatcgggctcagctcttcagtgaccacatttccatcaacagagttcgc
aagacccccaggctgaacggctcggcccaccacctccttttttcttgcgactccaccaag
ctttttctggcatcggatcggggctgcgtgcatgtgctttcactcttgcagtcagggatc
tgcaggcatctatacacgcttcgtcccaattcagagacgttggaagcagtgcaccagctg
gcggtgagtgcggatggcaggtggttgtgtgcagcaggtggagaccgggaaatctgcatc
tacaacttggaaaatactaagcttcactgcactgtgccaccctgtgagtgcccggtgact
gcaatggcaatccatccgctgaccaataacctcatcattgcacattcagatcagcaggtg
tttgagttcagcatcaaggagagaagctacacaccctggagccggaagctgcagcagctg
ggcctgcacaaggattggctggaacgggacacgcccatcacccacattgccttccgcccc
aggcacccctcgcatgtcttgctgcacgacacatacatgttctgcatcctggacatgtca
ctgccactgcacgaggattctgcagcctcgaagaagccggagccacacgtgaaaacaatc
caacgcggtcggggccgcgccttcaagatctgcaagaagttccagcctctgctctttgtg
gatttcctggatgacaattctttggtggtgatggagcggccgctgatggacatcaaagcc
cagctgccaccacccatctatcagaagaaatttgggacataa
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