Pituophis catenifer annectens (San Diego gophersnake): 139323696
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Entry
139323696 CDS
T11059
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcae03036
]
139323696 (CHD9)
Chromosome and associated proteins [BR:
pcae03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139323696 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
139323696
NCBI-ProteinID:
XP_070809241
LinkDB
All DBs
Position
Unknown
AA seq
2883 aa
AA seq
DB search
MTDPMMDFFDDANLFSDTLEGLSDDAFVQTGPVSLVDELNLGAEFEPLQIDSLNHVQEIP
TPQKMNDYEHLNQYDSLKLQVSQSFSSPVESVLSPHSDFSCSPVHPQTQTNGLFPDDVAD
GSPMWGHQTSSSVSNQNGSPFHQGPTPSMQQNKSFVAHHSFALFQASEQHHPCASLQLPP
SVNAGENTRNQPDGFMEVNASISHRTNVPHPSQAVDVSKSQPSISMPSFSQSRNNSPHFC
GNQEGSYDGPSPAITSCSINTQFSPPFPYNSNQISPSSLLQSSTTLSVSQQAHPLPDFSG
SDAFTTRRGTKQEDSDSLLNSSTSLTSNNFHVLHSAQPQGTFSSSKLSAVNMNFSTPPGS
GPQLSHFSDPIEGNGFSSLDENLLRQVESQSASFTELDPEALLQEDLLPQFDETAFVQEA
PSNDLEHQLEQRLVPQTNLLQTQSQNCNHPWYPPGSHLHQPEQKNVSAQDQPPSAKKADG
PGVYTKLQNTQVKSMLEKKQKKKVESESKQEKANRIISEAIAKAKERGERNIPRVMSPEN
FPSVSAEGREDKKGRKAKSKPKDKESRKPKTGSSKTKERAKIGKLIITLGKKQKRKIDSS
DEMSDAKQTTQQSFKDESSQKRRSNRQIKRKKYAEEGEGKQSEEETKVSVKIKKNSTPLP
AEQPLQLFVENPSEEDAAIVDKILSSRIIKKEIPGTASVEAEEFFVKYKNYSYLHCEWAT
EQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEELFNPDYIEVDRVLEVSFCEDKDTGEH
VTYYLVKWCSLPYEDSTWELKEDVDQGKIEEFEQLQALRLDSRRLDRPPPNSWKKIEQSR
EYKNGNQLREYQLEGLNWLLFNWYNRQNCILADEMGLGKTIQSITFLYEILRNGIRGPFL
IIAPLSTITNWEREFRTWADLNVVVYHGSMISRQMIQRYEMYFRDSQGRIIRDTYKFQAI
ITTFEMILGGCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNT
VEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAP
KQETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKG
AEEKILGEFRETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLD
ILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT
CIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQ
SMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQILQRRTKTITI
ESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSLVIDTPRIRK
QTRPFNATKDELAELSDIESEGEDKPKLRRPCDRSSGYGRTECFRVEKNLLVYGWGRWRE
ILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTENGQTRELQNHL
GLSAPVPRGRKGKKVKTQTSTFDIHKAEWLRKYNPEHLLQDDGYKKHIKHHCNKVLLRVR
MLYYLKQEVIGNECQKVFEGVDASEIDIWVPEPDHSEVPAEWWDTEADKSLLIGVFKHGY
EKYNTIRADAALCFLERVGKPDDKAVAAEQRANDYMDGDVEDPEYKPAPALFKDDMEDDA
SSPGDLVIGDGDGQIIEGDKLYWPTQSALTTRLRRLITAYQRTSKSRQSQPIQAPFSVQA
CVMPSAFEEAVLNPKVAAKIERQQRWTRREEADFYRVVSTFGVVFDPDRAQFDWTKFRAM
ARLHKKTDESLEKYLYAFMAMCRRVCRLPSKDDFVDSNLFIQPITEERASRTLYRIELLR
KVREQAVRHPQLCERLKLCQPNPDLPVWWECGTHDWDLLVGAAKHGVSRTDYHILRDPEL
SFMSAQRSYSHSKAALPRTSTPLLQQYQMALSASPLMPQARLPDAKGNVLEDAKPKDENH
KEPHSSDEESMSTENVQMGVKAEPSSPKSGSSPSHAADPKPVPKGDHDRRMVAARTEPLT
LNAASKKPRSGKRGSDSSSDSDSDSERSSCSSRSSSSSSSSSSSCSRSRSGSSSSSSSSC
SSASSSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRREGTPHLKAYDEESVASISTMQDE
TQDSFQMNNGTPNSNCILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPLARRNYET
NPVASFYTTKLLDSPGVAAEYSEPGIPTPPSADVKEESDQSAQMSKVKKHVQEKEFTVKI
NDEGGLKLIFQKQGLSQKRPFESEDGLLGQQQYLARLHELQNASETSLANFPKSLPESGI
YKQSNACANGVIASDQPAVKKRRGRRKNVEGVDILFLNRSKTPNHVCHGISTPQVGLGIM
PPLPFAPSQGLCDAESPVPVINLKDGTRLAGDDAPKRKDLEKWLNEHPDYVEDLGAFIPK
MQLHEGRPKQKRHRCRNPNKLDINSLTGEERVQLINRRNARKVGGAFAPPLKDLCRFLKE
NSEYGVAPEWADVVKQSGFLPESMFDRILTGPVVREEVSRRGRRPKSEIAKAAAAATSAA
NVPVAPLLTNGLLPGVDLSTLQALQQNLQNFQSLQVTTGLMGISAGLNTAGDAKNMAAVF
PMLLSGMAGLPNLLGMRGLLTKSTEPASEERKGQDPRELDGKKERTESSHAHNGGENSVS
GSPSTSSASTTASSLALNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFDVQNSENHGTG
FTKPLGEKEENSRVPDEEGGKGETEPSSRNGNSTDEASEKADASSGCDSTSSSSEDSDSS
DED
NT seq
8652 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccctatgatggatttttttgatgatgccaatctttttagcgataccttggaa
ggcttatcggacgatgcctttgtacaaacagggcctgtttctctggttgatgagttgaac
ttgggtgcagagtttgagccgttgcagatcgattctttaaaccatgtgcaggagatacca
actccacaaaagatgaacgattacgaacatctcaaccagtacgactctctgaaacttcaa
gtcagtcagtccttcagcagcccggtcgaaagcgttttatcccctcattccgacttcagt
tgctctcctgtccatccgcaaactcaaacgaatgggttgtttcctgacgatgtagcagac
gggagcccgatgtggggccaccaaacctcgagcagcgtttctaaccagaacggatctccg
ttccatcaaggacccacgccgtctatgcagcaaaacaaaagctttgtagcacaccacagt
tttgccttatttcaggccagcgaacagcatcatccgtgtgcctcgttgcagttgccgcca
agcgtgaacgcaggagagaacactcggaatcagcctgatggtttcatggaggtgaatgcg
tctatttcccatagaactaacgttccccatccctcccaagctgttgacgtttccaaatca
caaccgtctatctctatgccatctttttcccagagtaggaataactcgccccacttttgt
ggcaatcaagaaggaagctatgacgggccttctcctgccatcacgtcgtgctctattaac
acccagttttctcctccttttccctacaatagcaaccagatctctccttccagtcttctt
caatcttccacaactctttctgtcagccagcaagctcatcctctgcctgacttttcggga
agtgatgccttcacaactcgaagagggaccaaacaagaagattcagacagcctcctcaat
tcaagtacatcactgacttcaaataatttccacgtgttgcattcagcacaacctcagggc
accttcagtagttcaaagctttccgcggtgaacatgaatttttctacccctcctggatcg
ggtcctcagctaagccacttcagtgaccccatagagggcaatggtttttcgtctttggat
gagaatttgctccgtcaggtggagtctcaaagtgcatcgtttacagaactcgacccagaa
gcccttctccaggaagatctccttccccagtttgatgaaactgcctttgttcaggaggcc
ccaagtaatgatttagagcatcagctggaacagcgccttgtcccacaaaccaaccttctt
cagactcagtctcaaaactgcaaccatccttggtatcctcctggttctcatctacatcag
ccagagcagaagaacgtcagtgctcaagaccagcccccctctgccaagaaagcagatggt
cccggggtatacactaaactgcagaatacccaggtgaaatcaatgctcgagaagaaacag
aagaaaaaagtggaatccgaaagcaagcaggagaaagccaatcgcatcatatccgaggcg
atagccaaagcaaaagagagaggggagagaaacatcccgagagtcatgagtccagaaaat
ttcccaagtgtttcggcagaggggagagaagacaaaaaggggcgaaaagctaaatccaaa
ccaaaagacaaagaaagcaggaagcctaaaactggctcttccaaaactaaagagagggca
aaaattggcaagcttattattacactgggtaaaaaacagaagagaaaaattgattcctca
gatgaaatgtcagatgctaaacagacaactcagcaatctttcaaagacgaaagttcacag
aagagaagatcgaatcgacaaattaaaaggaagaaatatgccgaagaaggtgaaggaaag
caatctgaagaagaaaccaaagtttctgtaaaaataaaaaaaaattctactcctttgcct
gctgagcaacctttacaattatttgtagagaatccaagtgaagaagatgcagcaattgta
gataaaattttatcttccagaattatcaaaaaagaaattcctgggactgcgtcagtagaa
gcagaagaattttttgttaaatacaaaaactactcctacctccactgtgaatgggctaca
gagcagcagcttttaaaggacaaaagaatccagcagaaaatcaaacgtttcaagctgagg
caagcacagagagcccatttttttgcagatatggaggaagaactttttaatcctgattat
attgaagtagaccgggttttagaagtctccttttgtgaagataaagacactggagagcat
gttacttactatttagtaaagtggtgttccttgccatacgaagacagcacttgggaattg
aaagaagatgtagaccaaggaaaaatagaagaatttgaacagctgcaagctttaaggctt
gattcaagacgattggatcgccctcctcctaattcatggaagaaaatagaacagtccagg
gaatataaaaatggcaaccaactcagggaataccaattagaaggtctcaactggcttctt
ttcaattggtataatagacaaaactgcattttagcagatgaaatgggccttggcaaaacc
atccaatcgataacattcctctatgaaatccttcggaacggtataagaggacccttcttg
atcattgctccgctttcaaccatcaccaattgggagagagagttccgcacctgggccgat
cttaacgttgtggtctatcacggaagcatgattagtaggcaaatgatccagcgctatgag
atgtatttcagggattcacagggccgcatcattagggatacctacaagttccaggccatt
atcaccactttcgaaatgattcttgggggctgtcccgaactcaatgcaattgaatggcgt
tgtgttatcattgatgaagcacaccgattgaagaatagaaactgcaaacttctggaggga
ctcaaactcatgaatctggagcataaggtgctattgaccggcacacccctgcaaaacact
gtagaagaattattcagccttcttcacttccttgaacctctgcgattcccagccgaatct
acattcatgcaggaattcggagaccttaaaacggaggaacaggtgcaaaagttgcaggct
attctgaaaccgatgatgctaagaagactgaaagaagatgtagagaagaaattggctccc
aagcaagaaactattattgaagtggagttaacaaatatccagaagaaatattatcgagct
attttagagaaaaactttgcatttttgtccaaaggggcagggcaagctaatgtgcccaac
ttagttaataccatgatggaactcaggaaatgctgcaatcacccatatcttatcaaagga
gctgaggaaaaaatcttaggagaatttagggaaacctatagtccgagtgctcctgacttt
cacctgcaagcaatgatccaatctgctgggaaactagtcctcattgacaaacttcttcca
aaaatgaaagcaggaggccacaaggtgcttatcttctctcagatggtccgttgtcttgat
atcctggaagattacttaatacataaaaggtacctgtatgagcgaatcgatgggagagtg
agaggaaacctgcgccaggccgccattgatcgatttagcaagccggattctgatcggttt
gttttccttctctgcaccagagctggcggattaggcataaatttaacagcggctgatact
tgtataattttcgattcggactggaatcctcagaacgatttgcaggctcaagctcgttgt
cataggattggccaaaacaaggcagtgaaagtctacaggctgataacaaggaactcctac
gaaagggaaatgtttgacagagcaagcctaaaactcggcttagataaagctgtcttgcag
agcatgagtggccgagaaaacagcgttggcggcattcagcagctttccaaaaaggaaatt
gaagacttgcttcgaagaggtgcgtatggcgccattatggacgaagaggatgaaggctct
aagttctgcgaagaagatattgatcaaatcttgcaacgccgcacaaaaacaatcacaatt
gaatctgaagggaggggctctacattcgctaaggctagttttgttgcatctggaaacaga
acagatatttcattagatgatcccaacttctggcaaaaatgggccaaaaaagctgaaata
gacatagatgccatcagtggtagaaatagcttggttattgacaccccaagaattaggaag
caaacgaggccttttaatgctacaaaagatgagcttgccgagttgtctgatattgaaagt
gaaggagaggataaaccaaaacttagaagaccgtgtgatcgctccagtggatatgggaga
acagagtgctttagggttgaaaaaaacctgttagtttacgggtggggtcgttggagagaa
attttatcgcacgggcgcttcaagagacagctaaacgaacaagacgtggagataatttgc
cgagccctgctagcatattgccttgtccattatagaggagatgaaaagattaaaagtttt
atctgggatcttattacgccgactgagaacgggcagacgcgagaattacagaatcactta
ggtttgtcagcccctgtccccaggggcagaaaaggaaaaaaagttaagacccaaacaagc
acatttgatatacataaagccgagtggcttcgcaagtacaatccggaacatttgttgcaa
gatgatggatataaaaagcacataaaacaccactgtaataaggttttacttcgagttaga
atgctgtattacttgaagcaagaagtcattggtaatgaatgccagaaagtttttgaagga
gttgatgccagtgaaattgatatttgggtcccggaaccagaccactctgaagtgccagcc
gaatggtgggatacagaagcagataaatctctattgataggtgtttttaaacatggctat
gaaaaatacaacacaattagagcagatgccgccctttgcttcttggaaagagtggggaaa
ccggatgataaggcggtggctgctgagcagagagcaaatgactatatggatggggatgta
gaagacccagaatacaaaccagccccggccttgtttaaggacgatatggaggatgatgcc
tcatcgccaggagatcttgtaataggagatggagatggtcagatcattgaaggagacaag
ctttactggccaactcagtctgccttaacaacacggttgcgtcgtctcataacagcatat
caacgtaccagcaagagcaggcaaagccagccaattcaagcaccattttctgtccaggct
tgtgtgatgccatctgcctttgaagaagctgttttaaatccaaaagtggctgccaaaatt
gaaagacagcaaagatggacaagaagagaagaagctgatttctacagagtggtgtccact
tttggtgtagtatttgatccggacagagcccagtttgactggacaaaatttcgagcgatg
gcgaggctgcataaaaaaacggacgaaagtttagagaaatatctctatgcgttcatggcc
atgtgcagaagagtttgtcgcttaccttcaaaagatgactttgtggattcaaaccttttc
atccagccaataacagaagagcgtgcatctcgaaccttatatcgtattgagctcctcaga
aaggtacgagagcaagctgtccgtcatcctcagctctgtgagcgattaaaactttgtcag
ccaaatccagacttgcccgtttggtgggaatgtgggacccatgattgggatttattggtt
ggtgctgcgaaacacggagttagcaggacagattaccacatccttcgcgaccctgaactg
tcctttatgtcagctcagaggagctacagtcacagcaaagctgcacttccgaggacttct
actccgctcttgcaacagtaccagatggcgctgtcggcctctcctctcatgcctcaagcc
aggctgccagacgccaaagggaacgtgcttgaggacgcaaaacctaaggacgaaaaccac
aaagaacctcattcttcagacgaagagtccatgtctactgaaaacgtgcagatgggagtg
aaggcagaaccgtcaagcccgaagagtggctcatcaccctcacatgctgcagaccccaag
cctgttccgaagggggatcacgacaggcgcatggtggcagcaaggaccgaacccttaacg
ctaaacgctgcttccaaaaagccgagatctgggaagagaggatcagactctagctctgat
tccgactccgattcagagagatcgtcctgttcttccagatcatcttcatcttcatcgtcg
tcttcttcctcttgctctcgttccagatcaggatccagctcttcgtcttcttcatcttgt
tcttcagcgtcgtcatcctcttcctcctcttcttcctcttcctcctcttcctcctcttcc
tcttcgtcggaagagagtgacagtgatgaagaggaggcccaaaagagacgggaaggaacg
cctcacttgaaagcatatgatgaagaaagtgtggcttccataagcaccatgcaggacgaa
acccaggacagtttccaaatgaataacggaacaccaaattctaattgtatcttacaaggt
ggatatatgttagctgcttcttactggcccaaggatcgggttatgattaaccgcctggat
agtatttgccaaacagtcctgaaaggcaaatggcctttggcaaggagaaattacgagacc
aatcccgtggcttccttctacaccaccaagctcctagacagcccaggtgttgctgcagag
tacagcgagccaggcatcccgactcccccaagtgcagacgttaaagaagaaagcgaccaa
tcagcacagatgtcaaaggtgaagaagcatgtgcaggaaaaggagtttacagtgaaaatc
aatgacgaaggtggtttgaaattaatttttcagaagcagggcctttctcagaaaaggcca
tttgaaagcgaagatggcctgttaggacagcaacagtacctcgccaggctacatgaactc
cagaatgcttcagagaccagccttgccaattttccaaagtccttgccagagtcaggaatc
tataagcagtcgaacgcttgtgcaaatggagtaattgccagtgatcagcctgccgtgaaa
aagagaagaggaagaagaaaaaatgtggaaggagttgatatcttatttttaaatagaagc
aaaacgcctaaccacgtttgtcatggcattagtacccctcaggttggcctaggcataatg
ccccctcttccgtttgcaccatcgcaaggcctatgtgatgcggaaagccctgttccagtt
attaatttaaaagatggcacaaggcttgcaggcgacgatgcccctaagagaaaagatttg
gaaaaatggctcaatgaacatcctgactatgtcgaagatttaggagcctttatccccaaa
atgcagcttcacgaaggaagaccgaaacaaaaaaggcaccgttgccgcaatcctaataag
ctggacattaatagccttactggggaagaacgcgttcagctgataaacagaagaaatgct
agaaaggtaggtggtgctttcgctcctccgctgaaagacctctgcagattcctgaaagaa
aattctgaatatggtgtagctcctgaatgggcagatgttgttaagcagtcgggatttctt
ccagaaagcatgtttgaccgcattctcacaggacccgtcgttcgagaagaagtcagcagg
cgaggaagacggcctaaaagtgaaatcgccaaggcagcggctgcagctacgtcagcagca
aacgttcccgtcgcccctttgctgaccaacgggctactcccgggggtggatctctcaacc
ctgcaggccttacagcaaaacctgcaaaactttcagtcattacaggtgaccacgggttta
atgggaatatctgccggtctgaacacggcgggcgatgcgaaaaacatggccgccgtcttt
cccatgttactttcaggaatggctggtttaccaaatttgctcggcatgcgaggactccta
accaagtctactgaacctgcttccgaggagaggaaaggacaggaccccagagagctggac
ggaaagaaagagaggacagaaagctcacatgcacataatggtggagaaaactccgtctcg
ggttctccttcaacctcctcggccagcaccacggccagctccttagctcttaacccttta
ctcttgtccaatatactttacccaggaatgcttctcacgccaggccttaatctccatatc
ccagctttgtcccaatcgaatatttttgatgtacagaacagtgaaaatcatggcacaggc
ttcaccaagcctctgggagaaaaggaagaaaattccagggttccggatgaagaaggcggc
aagggggaaaccgagccgagctctcgcaacggaaacagcacagacgaagcttcggagaag
gcagacgcttcttctggctgtgacagtacatcctcctcgtcggaggactcagactccagc
gatgaagactga
DBGET
integrated database retrieval system
