Pituophis catenifer annectens (San Diego gophersnake): 139323710
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Entry
139323710 CDS
T11059
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139323710 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcae03041
]
139323710 (DHX38)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139323710 (DHX38)
Spliceosome [BR:
pcae03041
]
Complex C
Other components
Step II factors
139323710 (DHX38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
T2SSE
nSTAND_NTPase5
Flavi_DEAD
SLFN-g3_helicase
nSTAND3
AAA_16
SRP54
PhoH
Sigma54_activ_2
Toxin_trans_Wo
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
139323710
NCBI-ProteinID:
XP_070809266
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MGLCPAQEVQRRRLERPSAALWRKEGQRDAAAGHSGTAAAGPAPSGRGSVAQGPMEERAE
AAAAEASLHRLAGLAPEGQVGGLVLVKRRSAAEEQHVFKIPAPRASLLGLDLLAAQKRRE
REDRPAKRPRGGTAEEGADEPPRQPPEEPGDGAGRGGRRRRDRQYRSAQAETPSNPGGVS
EGFWERSRQRERERREQGVFASSKEKERRREQERKRDRGEPGPGAGLAGPSAHAADLPFS
AETRDRGRRSPRADKDGSSERSRSAPRTEPESPRQPPKDAATPSHSSWEEEDSGYSGSRR
SQWESPSPAPSCRDSERSHRSPAQPRESERRGDRERSSRSRGPEETPLPTPTYKYNEWAD
NHNRRHLGGPPWLSRGRGRCEDGEDGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFH
NPLAASSEEYVRKREQHLQRQKQTRISAQRRQINEDNERWETNRMLTSGVVHRLEVEEDF
EEDNAARVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSLLVRKHREQ
KERKKAQHRHWELAGTKLGNIMGIKKEEEEESRQVLAEDGTVDYRTEQKFAGHVKEKSEA
SSEFAKKKSIVEQRQYLPIFAVQQELLTVVRDNSIVIVVGETGSGKTTQLTQYLHEDGYT
DYGMIGCTQPRRVAAMSVAKRVSEEMNVALGEEVGYAIRFEDCTSESTVIKYMTDGILLR
ESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASF
FGNVPIFHIPGRTFPVDVLFSKTPQEDYVEAAVKQALQVHLSSAPGDILIFMPGQEDIEV
TSEQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVD
GIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYK
NELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDN
TGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESD
QVREKFAVPESDHLTYLNVYLQWKNNSYSTLWCNEHFIHAKAMRKVREVRAQLKDIMVQQ
HMSLASCGTDWDVVRKCICAAYFHQAAKLKGIGEYVNIRTGMRCHLHPTSSLFGMGYTPD
YIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQESRRRAKEEASAMEEE
MALAEEQLRARREEQERCNPMGSVRSTKIYTPGRKEQGQLATPRHTPARFGL
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgggactctgcccagcccaggaagttcaaaggcggcggctagaacgtccctccgcggct
ctatggcggaaagagggccagagggacgccgccgcggggcattctgggacggccgccgcc
ggccccgctccgtccggaagaggaagcgtcgcgcaggggcccatggaggagcgcgcggag
gcggcggctgcggaggcctcgctgcaccggctggccgggctcgcgcccgaggggcaggtg
ggggggctggtgctggtcaagcggcgcagcgccgccgaggagcagcacgtcttcaagatc
ccggcgccgcgcgcctccctgctgggcctcgacctcctggccgcccagaagcgccgcgag
cgggaggaccggcccgccaagaggccccgcggcgggaccgccgaggagggcgcggacgag
ccgccccggcagccgccggaggagccgggcgacggggcggggcggggcggccgccggcgc
agggacaggcagtaccgctcggcccaggcggagacaccgtcgaacccggggggcgtcagc
gagggcttctgggaacgcagccggcagcgggagcgcgagcggcgggagcagggcgtcttc
gcctcgtccaaggagaaggagcgccggagggaacaggagcgcaagcgcgaccgaggtgag
ccagggcccggcgccggcctcgcgggaccctctgcccacgctgctgacctgccattctcc
gcagagacccgtgaccgcggccggcgcagtccccgcgccgacaaggatggctcttcggag
aggagcaggagcgccccgaggaccgagccggagagcccgcggcagccgcccaaagatgca
gccacgccgtcgcactcgagctgggaggaggaagacagcggttacagcgggtcccgccgc
tcccagtgggagtctccctccccggctccctcctgcagggactcggagcggagccaccgg
agccctgctcaacctcgggagagcgagaggcggggcgaccgcgaacggtccagcaggagc
agaggccccgaagagacgcctttgcccacccctacttacaaatacaatgagtgggctgac
aaccacaaccgaaggcatttgggtggacccccttggctctccagaggcagggggagatgt
gaggatggggaagatggcattgcatttgaaacggaggaagaacggcagcaatgggaggac
gatcagcggcaagctgaccgggactggtatatgatggacgagggctacgatgagttccac
aaccctctggctgcctcctcagaggagtacgtgaggaagcgtgagcagcacctgcagagg
caaaagcagacgcgcatctcagctcagcgcaggcagatcaatgaggataacgagcgctgg
gagaccaaccgcatgctgacgagtggtgtggtgcatcggctggaggtggaggaggacttt
gaggaggataatgctgccagggtgcatctcttagtgcacaacctggtacctccttttctg
gatgggcgcattgttttcaccaagcagcctgagcccgtcatccctgtcaaagatgccacc
tccgacttggccatcattgcccgcaaaggcagcctgttggtgcggaagcatcgggagcaa
aaagagcgcaagaaggcccagcacaggcactgggagctggcagggacaaaacttgggaac
ataatgggcataaagaaggaggaggaggaggaatcaaggcaagtcctggccgaggatggc
acggtggattacaggacagaacagaagtttgctggacatgtgaaagagaagagtgaggca
agcagtgagtttgccaagaaaaagtcaattgtggagcagaggcagtacttgcccatcttc
gctgttcagcaagagcttttgacagttgtcagagacaacagtattgtgattgtggtggga
gagacgggcagtggcaaaacaacgcagttgacacagtacctacacgaggacggctacacg
gactatggcatgattggctgcacacaaccacgtcgagtggcggccatgtccgtggccaaa
cgtgttagtgaggagatgaacgtggcccttggggaggaggtgggctacgccatccgcttt
gaggactgcacttcggagagtaccgtgattaagtacatgacagacgggatcttgcttcgg
gagtctctgcgtgaagctgatcttgaccattacagtgccatcatcatggacgaggctcat
gaacgctcgctcaacacggatgtgctgtttggcctcctgcgagaagtggtagcccgtcgc
tcagatctcaagttgattgttacctcggccaccatggatgcagagaagtttgcgtctttc
tttggaaatgtgcccatcttccacattccaggccgcacatttcctgttgacgttctcttt
agcaagactccgcaagaagactatgtggaggcagcagtgaagcaggccctgcaggtccac
ctctccagtgcccctggagatatcctcattttcatgccaggccaggaggacatcgaggtt
acgtctgagcagattgtggaacatctggaagaactggaaaacgctcctgctctggctgtg
ctaccaatctactctcagctaccctcagatttgcaggccaagatcttccagaaggcacca
gatggagtcaggaagtgtattgtggccaccaatattgcagaaacctcgttgacagttgat
gggatcatgtttgtgatcgactccggatattgcaaactgaaggtcttcaacccacggatt
ggcatggatgccctgcagatctatccaatcagccaggctaatgcaaatcaacgctctggc
cgagctggaaggacaggcccaggtcagtgtttcagactgtacacccagagtgcatacaag
aatgaactgctgaccaccactgtccccgagatccaacgtaccaatctggccaatgtggtg
ctgcttcttaagtctttaggggtgcaagacctgctacagttccactttatggatccccct
ccagaagacaacatgctcaactcaatgtaccagttgtggattctcggggcgcttgataac
acaggtggtctgacatcaactggacgtctgatggtggagtttccccttgatccagccctc
tccaagatgctgattgtttcttgtgatatgggctgcagttctgagatcctgctgattgtc
tccatgctctcagttccagctattttttaccgaccaaagggtcgggaggaagaaagcgac
caggtgcgagagaagtttgctgttcccgagagcgaccacttgacttacctgaatgtttat
ctgcagtggaaaaataacagttattcaacgctctggtgcaatgaacacttcattcacgcc
aaggccatgcggaaggtgcgggaggtgcgagcgcagctgaaggacatcatggtgcagcaa
cacatgagcctggcttcctgcggcaccgactgggacgtggttcgcaagtgcatctgtgct
gcttactttcaccaggctgcaaaactgaagggcatcggggaatatgtcaacatccgcaca
gggatgcgctgccacttgcaccctaccagctcgctttttgggatgggctacactcccgac
tatattgtctaccatgaactggtgatgaccaccaaggagtacatgcagtgtgtcacagct
gtggatggggaatggctggctgagttggggcccatgttctacagtatcaagcatgctggc
aagtctcgtcaggagagccggcggcgagccaaggaagaagcatctgccatggaagaagag
atggctctggcggaagagcagctccgtgctcgcagagaagaacaggagcgttgtaatcca
atgggcagcgtcaggtccacaaagatttatacaccagggcgcaaagagcaaggccagctt
gccacacctcgccataccccagctcgctttggcctctag
DBGET
integrated database retrieval system
