Pituophis catenifer annectens (San Diego gophersnake): 139323912
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Entry
139323912 CDS
T11059
Symbol
TMC3
Name
(RefSeq) transmembrane channel-like protein 3
KO
K21988
transmembrane channel-like protein
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
139323912 (TMC3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pcae02000
]
139323912 (TMC3)
03037 Cilium and associated proteins [BR:
pcae03037
]
139323912 (TMC3)
Transporters [BR:
pcae02000
]
Other transporters
Pores ion channels [TC:
1
]
139323912 (TMC3)
Cilium and associated proteins [BR:
pcae03037
]
Other cilia and associated proteins
Stereociliary proteins
139323912 (TMC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
Orf78
Motif
Other DBs
NCBI-GeneID:
139323912
NCBI-ProteinID:
XP_070809572
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSFGGGSSAAKNARTCKRSKTVKRHASIYTYPEPPHSNSDEDNGDEKGDSNDPEQIFQNI
QFQKEIMANIRCRPWPMRQKLRALRQAKEIVLKYEGRLTRTRGYQAAGAELWRKFIRLAY
NFVVIFIPWEMRIKKIESHFGSGVASYFIFLRWLFGINIVLTIMTGAFVVLPEILAGDAF
GTTPNKRIPSDQFHSAQDLDTIWSLGGYLQYSVLFYGYYGQARKIGSAGYRLPLAYFLVG
MAVFAYSFIILLKKMAKNSRLSLASASDENYTFCWRLFCAWDYLIGNPEAAESKSAAIVN
SIREAILEEQEKKKSTNLAVTIALRIIANILVLLCLAGSIYIIYFVVDRSQKLERMKKEL
TLWEKNEVSVVVSLITMLAPSAFELIAALEMYHPRTTLRFQLARVLVLYLGNLYSLIIAL
LDKVDSMSFVETEVLKNRSNTVDTTTFLAAKILLEHNFSTPTPNMQTIKNGTFLLSENHT
QSYAHLIQLNNTAPHDFNSGSHQSQCWETYVGQEMLKLSIIDMLFTVASILLIDFFRGLF
VRYLSDCWCWDLESKFPEYGEFKIAENVLHLVYNQGMIWMGAFFSPCLPAFNVLKLIGLM
YLRSWAVLTCNVPHQQVFRASRSNNFYLAMLLFMLFLCMLPTIFAIARYKPSLTCGPFSG
QEKIYDIVSETIRNDFPPWFNSVMAYLSSPVVVLPALLLLFMLIYYLQSIARSLKFTNNQ
LRMQIQTERTEDKKKVVQMAAARIQNVEGNGKRPEQETDVISQESSARSSTPRKNGSVVN
FESPKASQIQTISQSVPPPEILKAVGPSPAKDNPGIPTPVAPIPVTPTPPIPEMVKPRTE
PSINRYPNPIHGSASELCKTKAYTPVKVKKPVEDVHSEPLFRKCLPQMKPEPHGPPGGPP
FVSRRAHTAKYYIVNEHQPRKKILRATTRLPRNIRMDEAGDFVELYPRHVRRYVVRTPRR
AYSPHYTEEEEEEYRRGVARQTHRPRSLSDLRAPPRFYIGEWTDNQVLPSRSLAKMHYKS
WEDGFGLTYGRGLHPHRKIHLKNIEFDQHYPEHPAKAKAKPKPVPSPTESDSISPESSSD
QPTSGNDQYIQVIPSKEKYLKSGVKGTPQKTKSGMELNLAEMNDLICSNV
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttggagggggcagttcagccgcgaaaaatgcaagaacctgcaagagatctaaa
actgtgaagcgacatgccagcatctacacctatccggaaccacctcacagcaactcggat
gaagataatggggatgagaagggcgacagcaatgaccccgaacagatcttccagaacata
caatttcagaaggaaattatggccaacattcgttgcaggccatggcccatgagacaaaaa
ctccgagcactgagacaagctaaagagattgtattgaagtacgaaggtcggctgactcgg
acaagaggctatcaagctgctggagcagagctatggagaaagtttattaggcttgcatat
aacttcgtggtcatcttcattccttgggaaatgagaatcaagaaaattgaaagtcacttt
ggctcaggagttgcttcttactttatctttttgcgatggctgtttggcatcaacattgtc
ctcaccatcatgacaggagcctttgtggttttgccagaaatcttggctggagatgccttt
ggaactacgcccaacaagcggatccccagtgatcaatttcattctgcacaagatctggat
accatctggtctttggggggttaccttcaatactccgttttgttctatggatattatggg
caggcaaggaaaattgggagtgctggttaccgactgccccttgcctatttccttgttgga
atggcagtttttgcctacagtttcatcattctcttgaagaagatggccaaaaattcaaga
ctgagccttgcaagtgcttctgatgaaaactacacattttgttggcgattgttttgtgcc
tgggattacttgattggcaaccctgaagctgcagagagcaagtctgctgccatagtgaac
agcatccgggaagctatcttggaagagcaagaaaagaaaaagagcacaaacctggcggtg
acaatagccttaagaatcattgcaaacatcttggtgcttctctgccttgctggaagtatt
tacatcatttattttgtagtggatcgatcccagaagttggaaaggatgaaaaaagagctg
accttgtgggaaaagaacgaagtgagcgtggttgtctctctcatcaccatgcttgcacca
tctgcatttgaactgatagctgcattagagatgtatcacccccgaactactcttcgtttc
cagcttgccagagttttggtcttatatttgggaaatctctacagcttgatcatcgccctt
ctcgataaagtggatagcatgagctttgttgagactgaagttcttaaaaatagaagtaac
accgtggataccactaccttcttagcagcaaaaatccttctggagcacaacttttcaacc
ccaactccaaatatgcaaacaattaagaatggcactttccttctatctgagaatcacacc
caaagctacgctcacctgattcaactcaacaatacagcacctcatgacttcaacagcgga
agtcaccaaagtcaatgctgggagacctatgttggtcaagagatgttgaaattgtcaatt
atcgatatgctgttcacagtagctagcatcctcctgattgatttcttccgtggacttttt
gtccggtacttaagtgactgctggtgctgggatctagaaagcaagtttccagaatatggg
gaattcaaaatagcagaaaatgtcctgcatttggtctacaatcaagggatgatctggatg
ggagccttcttttccccttgcctgcctgcgttcaatgtcctcaagctgattgggctgatg
tacctgagaagttgggcagtgttgacctgtaatgtcccacatcagcaagtcttccgagct
tcaagatctaacaacttctacttagctatgcttctatttatgctctttctgtgtatgctc
ccaacaatctttgctattgctcgctacaagccatctctaacctgtggcccatttagtggg
caagaaaaaatctatgacattgtgtctgaaactattcgaaatgactttcctccctggttc
aactctgtgatggcttatctaagtagtcccgtggtggtccttccagctttgttattactc
ttcatgctaatatattacctgcagagtattgcgaggtcattaaaattcaccaacaaccaa
ctaaggatgcagatccaaacagaaagaactgaagacaagaaaaaagtggtccaaatggca
gcagctagaatccaaaacgtagaaggaaatggcaagaggcccgaacaggagactgacgtc
atcagtcaggagtcttcagctcggtcctcaacccctaggaaaaacggcagtgtagtaaac
tttgaatctcctaaagccagccaaatacagacaatatctcaatcagtaccaccacctgaa
atactgaaagcagtgggaccatccccagcaaaagataatccaggtattccgacacctgta
gcgccaatacctgtcactccaacgccacctattcctgagatggtgaaacctagaacagaa
ccttcaatcaacagatacccaaacccgatccatgggagtgctagtgaactctgcaaaacc
aaagcctatactcctgtaaaggtgaagaaacctgtggaagatgttcattcagagcccttg
ttcagaaagtgcctcccgcaaatgaagccggagcctcacggtccccccgggggcccccct
tttgtgagccgcagagctcacacagccaagtactacattgtcaacgagcaccagccccgt
aaaaaaatcctccgtgccacaactcggctgccaaggaacatccggatggacgaggcaggt
gacttcgtggagttgtatccgcgtcacgtcagaagatacgtggtccgaacgccccgcagg
gcctactcgcctcattacactgaggaggaagaagaagagtacagaagaggcgtcgctagg
cagactcaccgcccacggtccttgtcggaccttcgggccccccctcgcttctacatcggg
gagtggaccgacaaccaggttctgccgagcaggtctctagcgaaaatgcactacaagtct
tgggaagatggttttgggttgacctacggcaggggactccatcctcacagaaagatacac
ctgaagaatattgaattcgaccagcattatccagaacaccctgccaaagccaaagccaaa
cccaaaccggttccatcccccaccgagtcagattccatttctcctgaatcgagcagtgat
cagcccaccagtggcaacgatcagtacatccaagtcattcccagcaaagagaaatatctg
aaatcgggagtcaaaggaaccccccaaaagacaaagtccggcatggagttgaacctggcc
gaaatgaatgacctgatatgctccaatgtctaa
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