Pituophis catenifer annectens (San Diego gophersnake): 139324207
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Entry
139324207 CDS
T11059
Symbol
NEO1
Name
(RefSeq) neogenin isoform X1
KO
K06766
neogenin
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04350
TGF-beta signaling pathway
pcae04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
139324207 (NEO1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
139324207 (NEO1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pcae04515
]
139324207 (NEO1)
Cell adhesion molecules [BR:
pcae04515
]
Immunoglobulin superfamily
DCC/UNC5 family
139324207 (NEO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
Pur_ac_phosph_N
ig
Ig_DSCAM-DSCAML_C
V-set
Interfer-bind
C2-set_2
Tissue_fac
V-set_CD47
Sp38
Herpes_UL74
EphA2_TM
TM_ErbB1
Arylsulfotran_N
TMEM154
Motif
Other DBs
NCBI-GeneID:
139324207
NCBI-ProteinID:
XP_070810030
LinkDB
All DBs
Position
Unknown
AA seq
1453 aa
AA seq
DB search
MAARGAWRRRLLLLGSLWVALLGGQRPDSSAAAAAAAPPQQHLSPAEPTVRTSTPFYFLV
EPVDTLSVRASSVVLNCSAYCESPPKIEWRKDGTFLNLVSDDRRQLLPDGSLLINSIVHS
KHNKPDEGHYQCVATVESLGTIVSRTAKLTVAGLPRFITQPESASVHRGNPIVLNCEVNV
DLAPFVRWELDHQPLFLDDRVLKLPSGTLIVSNATDEDAGTYCCVIEIGGSPKYSDEAEI
KVLPESDLPSGLLFLKQPFPLTKVTGQSAVLPCVASGIPVPLIRWTRKEEELVTENSHKF
LFLSGGTLKINDITEDDSGTYTCIADNGNETIEARADLTVQVPPTFLKQPANIYAHESMD
IVFECGVSGKPTPTVKWVKNGDVVIPSDYFKIVNEHNLQVLGLVKSDEGFYQCIAENDVG
NIQSGAQLIILDHDVAIPTLPPTSLTSATTDHLAPATTGPLPSAPRDVVASLVSTRFIKL
TWRTPASDPQGDNLTYSVFYTKEMSNRERVENTSHPGEMQVTIQNLMPETVYIFRVVAQN
RHGPGESSVPLKVATQPEVQLPGPAPNIRAYATSPTSITVTWGTPLSGNGEIQNYKLYYM
EKGTENEQDIDVGGLSYTIIGLRKYTEYSFRVVAYNKHGPGVSTQDVVIRTLSDVPSAAP
QNLTLEVQNSKNIMMHWQPPPTGTHNGQITGYKIRYRKMIRKSDVTEIIVGTQLSQLIEG
LERGTEYSFRVAALTVNGTGIATDWISAETFESDLDETRVPEVPSSLHVRPLVTSIVVSW
TPPENQNIVVRGYAIGYGVGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAYNNVGEG
IPLYESAVTRAYTVPDPSPMMPPVGVQASILSHDTIRITWADNSLPKNQKVSDARYYTVR
WKTNIPANTKYKTANTTTLSFLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEQVP
TSPPKDVTVVSKEGKPRTIIVNWQPPSEANGKITGYIIYYNTDVNAEIHDWVIEPVVGNR
LTHQIQELTLDTAYYFKIQARNSKGMGPMSEAVQFRTPKALGSAGKGNRPVDVGTDYKTP
ISGSNSPHGSPSPLEYNMLLIIIVSVGVITIVVVVIVAVFCTRRTTSHQKKKRAACKSVN
GSHKYKGNSKDVKPPDLWIHHERLELKPIDKSPDPNPIMTDTPIPRNSQDITPVDNSMDS
NIHQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDSQPPQPVVSAHPIHSLDNPHHHFH
SGNLASPTCNYLHHQANLWPVGTSVSHSDRANSTESVRNTPSTDTMPASSSQTCCADHQE
PESASASYLPSTQEEETSQNLPTAHVRPSHPLKSFAVPAVPPTGSTYDPALPSTPLLSQQ
ASSHPVHSVKTASIGTLGRTRPPMPVVVPSAPEVQETTRMLEDTESNYEPDELTKEMAHL
EGLMKDLNAITTA
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcggggcgcctggcggcggcggctcctactgctgggctcgctgtgggtcgcc
ctgctcggcgggcagcgccccgactcctccgctgccgccgccgccgccgcgccgcctcag
cagcacctctcgcccgcagaacctacagtgagaacttctactccgttttatttcctagta
gaaccagtggacactctgtcagttagagcttcttctgttgtactgaactgttcagcatat
tgtgaatcacctccaaaaattgaatggagaaaggacgggactttcttgaacttggtatca
gatgaccgccggcaattgctaccagatggatctttgttaatcaacagcattgtccattcc
aagcacaataaacctgatgaaggtcattatcagtgtgtggcaaccgtggagagtcttggc
accatcgtaagcaggacagctaaacttacagttgcagggcttccaagattcattacccag
ccagagtctgcatctgtccatagaggaaaccccatagttcttaactgtgaagttaatgtt
gatttagcaccgttcgtcaggtgggagctggatcatcagcccctctttctggacgatcgt
gtcctcaagttgccaagtggaactttaattgtcagcaatgctacagatgaggatgccgga
acttactgttgtgttatcgaaattggggggtctcccaaatacagcgacgaagcagagatt
aaagttcttccagaatccgaccttccttcaggcttgctttttttgaaacagccctttccc
cttaccaaagtgactgggcagagtgcagttttaccatgtgttgcttcaggcattcctgtc
cctctaatccgatggacaagaaaagaagaagagcttgttactgaaaattcccacaaattt
ctattcctgtctgggggaactctgaagataaatgatatcaccgaagatgattcaggaaca
tatacttgcatcgcagataatgggaatgaaactattgaagctcgagctgaccttactgta
caggtgcctcccacatttctgaagcagcctgctaatatttatgcacacgaatccatggat
attgtgtttgaatgcggtgtgagcggaaagccaactccaacggtcaagtgggtaaagaat
ggagatgtggtcatccctagcgactactttaaaattgtaaatgagcacaacctacaagtt
ttgggtttggtgaaatcagatgaaggcttttatcagtgtattgcggaaaatgatgtggga
aatatacagtctggagcccagctgataatactggatcatgatgttgccatcccaacatta
cctcccacttcactgaccagtgccactactgaccatctagcaccagctacaactggacct
ttgccttctgcccctcgagatgtggtggcgtctcttgtatctactcgtttcatcaagcta
acatggaggacccctgcatctgacccacagggagacaatcttacctactcggtgttctac
actaaggaaatgagtaacagggagcgtgttgaaaacacaagtcatcctggggaaatgcaa
gtgacaatccaaaacctgatgcctgaaacagtatatattttcagagtggtagcccaaaac
agacatggacctggggagagctcagtaccattgaaagtagccacacaacctgaggttcag
cttccaggtccagcccccaacattcgtgcgtatgccacctctcccacgtcgatcactgtt
acgtggggtacacccttatcgggcaatggcgaaatccagaactacaaactgtattacatg
gagaagggaacagagaatgaacaggacattgatgttggaggtctttcctatacaataatt
ggtttgagaaaatatacagagtatagcttcagggttgtggcctacaataaacatggtcca
ggagtctctactcaagacgtcgtcattcgtacactgtcagatgttcccagtgctgcaccc
cagaatctaacactagaagtgcaaaactccaagaacattatgatgcattggcagcctcct
cccacaggaacacataatgggcaaattactggctataagattcggtaccgaaaaatgatt
cgcaaaagtgatgtcaccgaaatcattgtggggacacaactttcacagctcattgaaggt
ttggaacgagggaccgagtacagcttccgagtggctgccttaacagtcaatgggacagga
atagctacggattggatatcggcagaaacatttgagagtgaccttgatgaaactcgtgtt
ccagaagtgccaagttcgttgcatgtccgtccacttgtaactagtattgttgtcagctgg
actccaccggaaaaccagaacattgtggtcagaggctatgccatagggtatggcgtaggc
agtccccacgctcagaccatcaaggtggattataagcaacgatactacactattgaaaat
ttggatcccagttcccattatgtgataactttgaaagcctataacaacgttggtgaagga
atccctctttatgagagtgcagtgactagagcctatacagtgccagacccctcccccatg
atgccacccgtgggagttcaggcttccatcctgagccatgacaccattcgtatcacctgg
gcagacaactctctgccgaagaaccagaaggtttcggatgcccgctactacactgtccgc
tggaaaaccaacattcctgcaaacacaaagtacaagacagccaatacaaccaccttaagc
ttcttggtcaccggcttaaaaccaaacacgttatatgaattctctgtcatggtgactaaa
ggccgaagatcaagcacttggagcatgacagcacatggcacgacttttgagcaagttccc
acctctccaccaaaagatgtaacagtggtcagcaaagaaggaaaacccagaactataatt
gtcaactggcaacctccgtctgaagccaatggcaaaattacagggtacataatttactat
aacaccgatgtcaacgctgaaattcatgactgggtcattgaaccagtcgtaggcaataga
ctgacccaccagattcaagagctgaccctggacacagcgtattatttcaagatccaagct
cggaactccaaaggcatgggccccatgtcagaggcagtacagttcaggactcctaaagca
ttgggatctgcaggaaaaggaaatcgaccagtggatgttggaacagattataaaacaccc
atcagtggaagcaacagccctcatggcagcccctccccactagaatacaatatgctcctg
atcataattgtgtctgtgggagtgatcaccattgtggttgtagtgattgttgctgtattt
tgcactcgaaggaccacctctcaccagaagaaaaaacgagctgcttgtaaatctgtgaac
ggatctcataaatacaaaggcaattccaaggacgtcaagccaccggatctttggatccat
cacgagaggctagagttgaagcctattgataaatccccagatcccaatccaatcatgacc
gacaccccgatccctcgtaactcccaagacatcacccccgtggacaactctatggacagc
aatattcatcagagacgaaactcctacagagggcatgagtcagaggacagcatgtccacc
ctcgcaggaagaagagggatgcggccaaagatgatgatgccgtttgattctcaacctcct
caacctgtggttagtgctcatcccatccattcccttgataaccctcaccatcatttccac
tccggcaacctcgcttctccaacctgcaactatctccatcatcaggcaaacctatggcca
gttggcacatctgtgtcccattcagacagggctaattccacagaatctgttcgaaataca
cctagcacagataccatgccagcatcttcatctcagacatgttgtgccgaccaccaagag
ccagagagtgcttcagcatcctacctgcccagtacccaggaagaggagacaagccagaac
ctgcccactgcccatgtccgtccctctcatcctctgaagagtttcgctgtgccagccgtc
ccgcccactggcagcacttatgaccctgccttgccaagcacacctttattatcacagcaa
gcttctagccatccagttcattcagtgaagacagcatcaattggaactctaggaaggact
cggcctccaatgccagtcgtagtcccgagtgcccctgaagtgcaggaaaccacaaggatg
cttgaagacacagaaagtaattacgaaccggatgaactcaccaaagagatggcccacctg
gaaggactaatgaaggaccttaacgccatcaccacagcgtga
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