Pituophis catenifer annectens (San Diego gophersnake): 139325439
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Entry
139325439 CDS
T11059
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139325439 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcae03021
]
139325439 (CPSF3)
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139325439 (CPSF3)
Transcription machinery [BR:
pcae03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139325439 (CPSF3)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139325439 (CPSF3)
U7-dependent histone pre-mRNA processing factors
139325439 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
139325439
NCBI-ProteinID:
XP_070811422
LinkDB
All DBs
Position
Unknown
AA seq
692 aa
AA seq
DB search
MSARRRTEAFVPAEESDQLLIRPLGAGQEVGRSCIVLEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAETDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGTFSLLHYHLQKL
TGDIKEIEVQDKPALKVFKNITVVQEPGMVVLEWVANPANDMYADTVTTVILEIQSNPKV
HKAMMRKIPKKEEIEDYNKKMEIMLQDIFGEDCVSSKKDNVLSITVDGKTANLSLDTRTV
DHEPGCEDDDETLREMVELAAQRLYDAITPIQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgaggaggagaaccgaagccttcgtcccggctgaagagagcgaccagctgctg
attcggcccttaggtgctgggcaagaagtaggaagatcatgtattgttttggaatttaaa
ggaaggaagataatgcttgactgtggaatccaccctggcttagagggaatggatgctctt
ccttatattgatcttatagatccagctgaaactgatctccttctgataagtcatttccat
ttggatcactgtggggcattgccatggtttctgcaaaaaaccagctttaaaggaagaact
ttcatgactcatgctacgaaagcaatttatagatggctgctctcagattatgtcaaagtc
agcaatatctctgcagatgatatgctatacacagaaactgacctggaagaaagcatggag
aaaattgaaacaataaactttcatgaagtaaaagaggtggctggcatcaaattctggtgt
taccatgccggacatgttctgggagcagccatgtttatgattgaaatagctggagtgaag
cttttatacacaggtgacttctcaagacaggaagacaggcatttgatggcagctgagatt
cccaatattaagcctgatattctgatcattgaatcaacatatggtacccacatccatgag
aagcgggaggagcgagaggctcgattctgtaacactgtacacgatattgtaaacagggga
ggacgaggcctcattcctgtgtttgctttgggaagagctcaagaattgcttttgattttg
gatgaatactggcaaaatcaccctgaactacatgagatacctatatactatgcttcttcc
ctggcaaagaagtgcatggcagtgtatcagacctacgtcaatgccatgaatgataaaatc
cgcaagcaaatcaatatcaacaacccctttgtattcaagcacattagtaatctgaagagc
atggatcattttgacgacattggtcccagtgtggtaatggcttcccctggtatgatgcag
agtggcttatccagagaattatttgagagctggtgtactgacaaaagaaatggagtcatc
atagcaggttattgtgtggaaggaacacttgccaagcatatcatgtctgagcctgaagaa
attacaacaatgtcaggccagaaactaccactgaagatgtctgtggattacatttctttc
tccgctcatacagattaccagcaaaccagcgagtttattcgggcactcaagcccccccat
gtgatattggtgcatggtgagcagaatgaaatggccagactgaaagctgccttaatacgt
gaatacgaagataacgatgaagttcacatagaagttcacaatcctagaaatactgaagct
gtgactctaaacttcagaggagaaaaactagccaaagtaatgggttctctagctgataag
aaaccagaacagggacagcgagtttcaggaatactagtgaaaagaaactttaactaccat
attctttctccttgtgatctgtccaattacacagatcttgccatgagcactgtgacacag
acacaagctattccgtacacaggcacattcagtctgcttcattaccatctgcaaaaatta
acaggtgatataaaagaaatagaggtccaggataagccagctttgaaagtttttaaaaac
attactgtggtccaagaaccaggcatggtggtgctcgaatgggtagcaaatcctgccaat
gatatgtatgcagatactgtaacaacggtgattctagaaattcaatcaaatcctaaagtt
cataaagcaatgatgcgtaaaattccaaaaaaagaagaaatagaagattataacaaaaaa
atggaaattatgcttcaggacatatttggagaagattgtgtaagttcaaagaaggataat
gtgctcagcatcactgtggatggaaaaacagcaaatctctcattggatacaaggactgtt
gatcatgaaccaggatgcgaggatgatgatgaaactcttcgggaaatggtcgagctggct
gcacagcggctttatgatgctatcactcctatacaataa
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