Pituophis catenifer annectens (San Diego gophersnake): 139325692
Help
Entry
139325692 CDS
T11059
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139325692 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139325692 (NUP188)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139325692 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
139325692
NCBI-ProteinID:
XP_070811747
LinkDB
All DBs
Position
Unknown
AA seq
1735 aa
AA seq
DB search
MAAGGLSARSSRELWTILLGRSALREPAQIAEELNKHWQRLLEGLCYYKPPSSNSAEIVK
ADKNVPASLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDDRQSQTLL
LKIADYYYEERFCILRCVLHILTYFQDERHPYMVPYSQCMEKLDKELVPNYRKQFEDLYK
AEAPTWETHGSLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMTPEELLTFAKMFKDQ
GFGSRQTNRHLVDESMDPLVDRIGYFSALILVEGMEIDSLHERLLDDRKEEHKFAGNGQI
RQEMDRLLLTLGDVPHHAPVLLAWALLRHTLSADGSSGVIRRMGSTAIQMNVFQYLTKLL
QAISSEGNCISSTSCMCIYGLLSFVLTSLELHTLGNQQDIIDTACEVLASSSIPPLFWKT
EPTAGLGIILDSVCGMFPHLLSPLLQLLTALVSDKSTAKKVYTFLDKMSFYIELYKHKPP
DVFPHEDGTLWRRQTPKLLYPLGMGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTLF
TCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLHRLTT
VISPPVDIIASCVKCLTVLASRMPAKVWTDLHHTGFLPFVANPVSNMSHMISAEGMNAGG
YGNLLMGIEQPQGEYGVTISFLNLVMTLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHKWR
YNSHGVREKIGYLILQLIHAILNLCPEMDPRSSSAPSLQALCIFSLANTEAGQAVISIMG
IGVDTIDMVMASQSCSDGESQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEHALTQHG
AHRNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDASAIRDAFLTRL
QSRIEDMRIKVMILDFLTVAVETQPGLIELFLNLEVKDGGEGCKEFSLGEWSCLHVVLEL
IDSKQQERYWCPPLLQRATIAFLHALWQDRRDSAMLVLRNKPKFWGNLTNPLFGTLPPPS
ETSELSVLETCALIMKIICLEIYSVVKGSLDQSLKDTLKKFSAEKRFAYWSGYVKSLAFH
VAETEGSGCASVTEYQMLISAWRMLLVVSTSHADIVNLTDMEVQQLFLDVLSGTKALLLV
PTSGCCLQLGSMLCTLLLILLRQWRSKLGSADEIINSLTQILDGVLQADQQMMEKTKAKV
FSALITVLQMKETKASEIPQYSQLVLSVCETLQEEFIALFDHTRHCLTSGDSLEDKDSME
TDDISRHKQKDQRDGVCVLGLHLAKELCEVDEDGDSWLHVMRSLPLLPTLCTTLEVSLRL
KQNLHFTEASLHLLLTLAKTQQGAAAVATAGILHSICLPLLSVYQLSSNGGGQVPVSSRR
SLDGPSWPGVYRLSVSLMERLLKTLRYNFLTDALDFVGVHQERILQCLNAVRTVQSLACL
EEADHTVGFLLQLSNFMKEWHFHLPQLLRDVQVNLCYLCQACTSLLHSRKMLQHYLQAKN
GESIPSAVLPRLQRAPQISAKPASPESEAAEQRALRTVQYSLLKILSKCLAALRHFTPDI
CQILLDQSLDLAEYNILFMLSFTTPAFDSEVAPSFGTLLATINVALNMLGELDKKKDPFS
LAAGPSPQQEGNKTLKPLLMFTMENCFYLLISQAVRYLKDPAVHSRDKQRMKQELSSELS
TLLSSLSRYFRRGGPSSPAGGLLPSPQGKPSSKLGPEGQDPLFQLVQTFVRHVQR
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggcgggctgtctgcgaggagcagcagagaactgtggaccattcttttggga
agatcagctttgagagaaccggcacagatcgcagaagagttgaataaacattggcagagg
ttgcttgaaggactttgttactataaaccacccagttccaattcagcagaaatcgtgaaa
gctgataaaaacgtgcccgcttcgttgaaggaactgggactccgagtcagcaagtttttg
ggtttggatgaggagcaaagcgtgcagctcttacaatgttaccttcaagaggattatcga
gggactagagactcgctaaagaccgtgctgcaagatgacaggcagagccaaactctgcta
ctgaagattgctgattactactatgaggaaaggttttgtattcttcggtgcgttcttcac
atcctcacttatttccaggatgagaggcacccttacatggtcccgtattcacagtgtatg
gaaaaactggataaggaactggttcctaattatcggaaacagtttgaagatctgtataaa
gcagaagcgcctacatgggagacacacggaagtctgatgacggagcggcaagtgtctcgc
tggttcgtgcagtgcctccgcgaacaatccatgctgctggagatcatcttcctctactac
gcctattttgagatgaccccggaggagctgctgactttcgccaagatgttcaaggaccag
ggcttcggttctcggcagaccaaccgccacctggttgatgaaagcatggaccccctggtg
gatcggattgggtacttcagtgctctaattctggtggaaggcatggaaatcgactcctta
cacgaacgtttgttggacgacaggaaagaggaacataaatttgctggcaatggacagatc
cgccaggaaatggaccgcctgctgctgaccctgggcgacgtcccccatcacgcccccgtt
ctcttggcctgggctttactccggcacaccctgagcgctgatgggtcgagcggggtgatc
cggcggatgggaagcactgccatccaaatgaatgtcttccagtatttgacaaagctgctc
caagccataagttctgaaggaaattgtatttccagcacctcctgcatgtgcatttacggc
ctcctttccttcgtgctgacttccctggagctgcacacgctcggcaatcagcaggacata
atcgacacagcgtgtgaagttttggcctcttccagcattcctcccttgttctggaaaacg
gaaccaacagcaggtctgggcattattttggatagcgtctgtggcatgttcccacacctt
ctctctcctcttcttcagttactcactgcactcgtttcagacaagtcgacggcaaaaaag
gtttacacatttttggacaagatgtcattctatattgagctttataagcacaaaccacca
gatgtcttccctcatgaagacgggaccctctggaggaggcagacgcccaaattgctgtac
ccccttgggatgggtcaaaccaaccttcggatccctcaagggacggttgggcaggtgatg
ctggacgaccgggcctatttggtacgctgggagtattcttacagcagctggacgctcttc
acctgcgaaattgagatgctgttgcatgtggtgtcaacagctgatgtcatccagcattgc
cagagggttaagcccatcatcgatctggttcacaaagtcatcagcaccgatgtgtcaatt
gccgattgcctcctgcccatcacctcccggatctacatgctgctacacaggttaaccact
gtgatttctcccccggtcgacattatcgcctcttgcgtcaaatgcttaacggtcctggct
tcccggatgcctgccaaggtctggactgatcttcatcatacaggctttttaccttttgtg
gcaaatccggtttctaatatgagtcacatgatcagtgcagagggaatgaacgctggaggc
tacgggaatctgctgatgggcattgagcagcctcaaggcgaatacggtgtgaccatctcc
ttcctgaatttagtcatgacactagtccgggggcagctgggcagcacccagagccagggc
ctggtgccgtgcatcgtgtttgtcctgaaggagatgctaccaaattaccacaagtggcgc
tataactcccatggagtgagagaaaaaataggatatcttatccttcagctgatccatgca
atcttgaacctgtgccctgaaatggatcctcgtagcagcagtgcccccagcctccaggcc
ctttgcatcttcagcctggccaatacagaagcaggccaggcggtcatcagcatcatgggc
attggggtggacaccatcgatatggtgatggccagccagtcctgcagtgatggggaatct
cagggccagctcctgatccagacggtgaaactggcgttctccgtcaccaacaacgtcatc
cggttgaagccgccctccagcgtcgtgtcacctctggagcacgccctgactcagcatggg
gcccatcggaacaatctgattgctgtcttagccaagtacatctatcataaacacgaccca
gccttgccacggctagccatccagctcctgaagcggctggcaacggtggctcccatgtct
gtctacgcctgcctcggcagcgacgcctctgccatccgcgatgccttcctgacccgcctg
cagagcagaattgaggacatgcgcattaaagtcatgatccttgacttcctcacggtggcc
gtggaaacccagcccggcctgatcgaattgtttcttaacctggaagtgaaagatgggggc
gagggctgcaaggagttcagcttaggggaatggagctgccttcacgtggtcctggagctg
attgactccaaacagcaggagcgctactggtgcccgccccttctgcaacgagccaccatc
gcttttctccacgctctgtggcaagaccgccgagacagcgccatgctagtcctccggaac
aagccaaagttttggggaaacttaaccaacccgttgtttggaacccttcctccgccgtcc
gaaacatctgagctgagtgtcttggaaacctgtgccttgataatgaaaataatttgcctg
gagatttattccgtggtcaagggatctctggaccagtccttgaaggacacactcaagaag
ttttcggctgagaagcgctttgcttactggtcgggctacgtaaagtccctggccttccac
gtggccgagacggagggcagcggctgcgcctctgtgaccgagtaccagatgctgatctca
gcttggcgaatgctgcttgtggtttccaccagccacgctgatatcgtgaacttgactgac
atggaggttcagcagctgttcctggacgtcttgagtgggaccaaggctttgctgctggtt
cccacttccgggtgttgcctgcagttaggatccatgctgtgcaccctcctgctaattctg
ctgcgacagtggaggagcaagttgggctcagcggacgaaatcatcaactccttgacgcag
atcctggacggagtgcttcaggctgaccagcagatgatggagaagaccaaagccaaggtc
ttctccgcgcttatcaccgtcctgcagatgaaagaaactaaagcaagcgaaatccctcag
tactcgcagctggtgctgagcgtgtgtgagacccttcaggaggaattcatcgccctcttc
gaccacacccggcactgcttgacttcaggagattccctggaggacaaagacagcatggag
acggacgacatctcccggcacaagcagaaggaccagcgagatggggtgtgcgtgctgggc
ctccacttggccaaagagctgtgcgaagtggacgaagacggcgacagctggctgcacgtg
atgcggagccttcccctcctccccaccctctgcaccaccttggaggtcagcctgaggctg
aagcagaatttgcacttcaccgaagcctcactccacctgctgctcaccttggccaagact
cagcagggggcagcggccgtggccacagctggcatccttcacagcatctgcttgcccctc
ctgagcgtctaccagctgagcagcaacggagggggacaggtccccgtttcctctcggcgg
tctctggacggcccgtcgtggccaggcgtctatcgcctctccgtgtcgctgatggagcgc
ctgctgaagaccctccggtacaacttcctgaccgatgccttggacttcgtgggtgtccat
caggagaggatccttcagtgcttaaacgccgtccggacggtgcagagcctggcctgcctc
gaagaagccgatcacaccgtgggcttcctcctccagctgtctaacttcatgaaggagtgg
catttccacctaccccagctcttgagagatgtccaggtcaatttgtgctacctgtgccag
gcctgcacttccctgctccacagccgcaaaatgcttcagcactacctgcaggccaagaac
ggcgagtccattccctcggcggtcctgcctcgcctccagagagccccgcagatttcggcc
aagccggccagccccgagtcggaggcggcggagcagagggcgctgcgcaccgtccagtac
agcctcctgaaaatcctcagcaagtgtcttgcggccttacgtcacttcacccctgacatc
tgtcagatccttctcgaccagtccctggacctggcggagtacaacatccttttcatgctc
agctttacgactccggcctttgactcggaggtggccccctcttttgggaccctgctggcc
accatcaacgtggccctgaacatgttaggggagttggataagaagaaggaccccttcagt
ctggctgcagggccctccccccagcaggaagggaacaagaccctcaagcctctcctgatg
tttaccatggagaactgcttctacctgctcatctctcaagcggttcggtatttgaaggat
ccggcggtgcactcgcgagataaacagcgcatgaaacaggagctcagctcagagctgagc
acgctgctctccagcctgtctcgctatttccgccgtggtggtccttcctcgcctgctggg
ggccttctgccctctccccagggaaaaccctcctccaagctggggccggaaggccaggac
cccctcttccagctggtgcagacctttgtcagacacgtgcaaagataa
DBGET
integrated database retrieval system
