Pituophis catenifer annectens (San Diego gophersnake): 139325857
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Entry
139325857 CDS
T11059
Symbol
WHRN
Name
(RefSeq) whirlin
KO
K21879
whirlin
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pcae03037
]
139325857 (WHRN)
Cilium and associated proteins [BR:
pcae03037
]
Primary cilia and associated proteins
USH complex and associated proteins
139325857 (WHRN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
HHD_RTEL1
PDZ_4
USH1C_N
Motif
Other DBs
NCBI-GeneID:
139325857
NCBI-ProteinID:
XP_070811997
LinkDB
All DBs
Position
Unknown
AA seq
945 aa
AA seq
DB search
MSADLDRLSVGSRASSASSSPSFDGAGKGAAGQAGLRSGGAGSGLRLLSANVRKLHGALN
LLLSEGEREQFIHCLNVYHCRRNVYDLVQTLKVLLDGPEKRQLLPMLRLVIPRSDQLLFD
QYTSEGLYLKADFLPTAGARYDGAGSTRDLPGEIRQVNLKRQKAQEGLGFSIRGGSEHGV
GIYVSLVEPGSLADKEGLRVGDRILKVNDKPLDKVTHAEAVKALKGSKKLNLTVHSVGRI
PGGYRTNHIYTWVDPQGRRVSPPVGLLQHQSSSLCKESEKRSHLQLLQEGDEKKVNLVLD
EGRSLGLMIRGGSEYALGIYITGVDKDSEAENTGLKVGDQILEVNGRSFLSISHDEAVNL
LKSSRHLIMTVKDVGRLPHARATVDETKWITSSQIGETMVNSAGASDDPMGETTPKPSFY
KGLTGSQVTLSSLVNQNRVMLEEHARHLLNEPERTTMGYYLDEYKEKNISIDSLIMALFE
LLNTHAKFSLLSEVRGVISPQDLDHFDHLVLKREIEFMKARQPSGTGTDCYSTTSYSDSA
SCTESHFTSTTASSARERLLWLIDLMENSSDGGRSGSQNRINALPDISLDDVSSFYEELP
AFRPSPPAPSSQSRADPSDQAHKPSSGSSESSQSGLFFMAPQSPMPSSSLSEKDTHSLAS
NSTTGSSMEDSASSSIYASISPATRISRKPTEARLLTLNQHPMLPFPRIQSPSRLKQPSP
EAAGTAPSSPTHLPLPAHPAAFPPGEKSGFEVGNTQHFIMVEVHRPNSEPDVNEVKPLPQ
ARASTLSQLSDSGQTLSEDSGVDLGEAELSTSRERSQRLQGLPPARSPQGVPRVGRAVEA
GPKPPGLLEPTSHLIRVSKSAPTLGIAIEGGANTRQPLPRIVTIQKGGSAHNCGQLKVGQ
VILEINGTALCGKEHREAARIIAEAFKTKEKDYIDFLVTEFNVAL
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcagacttggaccgtctgtcggtgggttcgcgcgcctccagcgcttcttcctcg
ccttccttcgacggtgcgggcaagggggccgcgggacaggccgggttgaggagcgggggc
gccggatccggcctccggctgctgtcggccaacgtgcggaagctccacggggccctcaac
ctgctgctgagcgaaggcgagcgggagcagttcatccattgccttaacgtctatcactgt
cggcggaatgtctacgacttggtgcagacgctcaaagtcttgttggacggtccggagaag
aggcagctgctgcccatgttgcgcctggtcatccctcgctccgaccagctcctcttcgac
cagtacacctcggagggcctttacttaaaggcggacttcttgcccaccgccggggcaagg
tacgatggggctgggtctaccagagacctgccaggagaaatcaggcaggtgaatctcaag
aggcagaaggctcaagaagggttgggtttcagcatccgagggggctccgagcacggcgtt
ggcatctacgtctccctggtggagccgggctccttggcggataaagagggccttcgggtg
ggagaccggatcctgaaggtcaacgacaagccgctggacaaggtgacccacgctgaagcc
gtcaaggcgctcaagggctccaagaagctgaacctgactgtccattcggtgggtcgcatc
cccggcggctacagaaccaaccatatctacacctgggtggaccctcaaggccggagggtc
tctcccccagtcggcctgctccagcatcagagcagctctttgtgcaaagagagtgagaaa
aggagccaccttcaacttctgcaggaaggggatgagaaaaaggtgaaccttgtgttggat
gaagggagatctctgggtctcatgattcgagggggatctgaatacgccctcgggatttac
atcacgggggtggacaaggattcggaagcagaaaacactggcttgaaagttggagaccag
attctggaggtgaatggacgaagcttcctcagcatttcccacgacgaggccgtgaacctc
ctgaagtcctcccgtcatctcatcatgaccgtcaaggacgtgggaaggctacctcacgcc
cgggccactgtggatgagaccaagtggatcaccagctctcagattggagagacgatggtc
aattcggcaggggcctctgatgatcccatgggggagacgacaccaaagccatctttttat
aaaggtcttacgggatctcaagtaacgttgagtagcctggtgaaccaaaaccgagtgatg
ctggaggagcacgcacgccacctcctgaatgaacccgaaaggaccaccatgggctactac
ctggatgaatataaggagaagaacatctcgattgattccctcatcatggctctctttgaa
ttgctcaacacccatgccaagttctccctcctgtcggaggtcagaggggtgatatctcca
caagacctggaccattttgatcatctggttctgaagagggaaatagaattcatgaaggcc
cggcagccctccgggacaggaacagattgttactccacaacgtcctacagtgattccgcc
tcgtgtaccgaaagccattttacgtccaccacagccagttcagctcgggagaggctcctg
tggctgattgatttgatggagaattcttccgatggcggtaggagtggaagccaaaacagg
atcaatgccttacctgacatctccctggacgatgtctcctctttctatgaagaacttcca
gcttttaggccctcacctcctgctccgtcctctcaatcgcgggcagatccttcagaccaa
gcacacaaacccagttcgggatcttctgaatcttcccagtcggggctgttcttcatggct
cctcaaagccccatgccatcttccagcctctctgagaaggacacccacagcctggcctcc
aactccaccactggctcttccatggaggactcggcctccagctccatctacgcgtccatc
tctccggcgactcgcatttcgaggaagcccacggaggcccgattgttgacgctcaaccag
caccccatgctacctttccctcggatccagtcaccctcccggttgaaacagccttcccct
gaggcagctggcacggccccaagctcccctacccacctaccccttcccgcccacccggct
gctttccctcccggcgagaaaagcggttttgaagtggggaatacccagcactttatcatg
gttgaagttcatcggccgaatagcgaaccggatgtgaatgaagtcaagccattgcctcaa
gctagagcctccacgctctcccagctctcggacagcgggcagacgctgagcgaagacagc
ggcgttgatctgggagaagcggagctgagcaccagcagagagaggagtcagcggctgcag
ggcctgccaccagcacgaagtccccagggagtccctagagtgggcagagcggtagaggca
ggacccaaaccgccaggactcctggagccaacttcccatctaatccgtgtgtcgaagagc
gccccgaccttgggcattgccatcgaagggggtgcaaacacgcgacagcccctgcccagg
attgtcaccatccagaagggcggttctgctcacaactgcggccagttgaaggtgggccaa
gtgatcctggaaatcaacggcacggccctctgcgggaaggagcaccgcgaagccgctcgt
attattgccgaggctttcaagacgaaagagaaggattacatcgatttccttgtcacagaa
tttaacgttgcactttag
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