Pituophis catenifer annectens (San Diego gophersnake): 139325894
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Entry
139325894 CDS
T11059
Symbol
RC3H2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcae03000
]
139325894 (RC3H2)
04121 Ubiquitin system [BR:
pcae04121
]
139325894 (RC3H2)
Transcription factors [BR:
pcae03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
139325894 (RC3H2)
Ubiquitin system [BR:
pcae04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139325894 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4
zf-C3HC4_4
zf_CCCH_4
zf-C3HC4_2
zf-CCCH_UNK
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
139325894
NCBI-ProteinID:
XP_070812033
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCQSCLSKLHRKACPFDQTAIHTD
IDVLPVNFALLQLVGAQVPNRQALKLSNLGEDKHYEVAKKCVEDLALYLKPLSGSKGVAS
LNQSTLSRPMQRKLVTLVNCQLVEEEGRIRAMRAARSLGERTVTELILAHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIALEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLEFLANI
DPNPDAASPTWEQLENATVAVKTVVRGLVDFIQNHSRKGPEIPQPQPNSKYKTSLCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKIGAVTARPFPLLGKASITSAIPPTAGNVIPI
IGNTDPAGKAVSNINRSPSPESVGPQLIPRCINSPSLRTLEHVKKGGKAVANGQNPTLSP
NEPLPEHQTGSSPKTPVSQTSATSAGPIPPPPPPLPPSPALAGSEISPLAPKPSPFTARL
PIYPAHSESLPYFQDPRAHLSYEAPPYPQTGYYPGPPAVPTAVPPCLPRFVRSSSVSESP
LPPASLPYSEHYSTFPSRDRLTAAYQQAPPQPAYGPVPPVPSGMYAPVYDSRRIWRPPMY
QRDDIIRSNSLPPMEVTHPSVYHNFLRERYGSLDSYCSVPCQVPAEQRAVPWAREPCGHL
KPAYEDPLRKKAEQWAPCHVPKVPLVTTSTLPAAAASPSSPSPLFCVDFSSEFSENSSGS
SDTKYEDGQLCQYSPWSCSTISSCISAVEAEPKDVLAKSTTILLDLDSGDPKRPAAHLFE
TQRKAKDEDPIIPFSDGPIISKWGAISRSSRTGYHTTDPVQATASQGSTTKPISMSDYIP
SISSVDLRWSCYASDSTSSAPFIERDQFVSPEESAPKKHSSTGDLLSTELQQAKRNSVLL
QREANALATQQKWDSLSEGSALTLKLLSKEMELRNGQADSPEGNTGTKSKRDIELELSSL
DTDEAEGQGEPMEEMLGLQLGTNSQNDHLFSGSALENGHPAEQPPMDARQAKRPFLHEEL
ALLEKRKGVSPAASCFSQPTESSAGSRISLPIMTTSAGMRSLLLKTAHGIVEGQNDFLRP
IANGKMLNTGKSDGS
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaggccgcccagtggacggagttcctgtcctgtcccatctgctacaatgag
ttcgacgagaacgtgcacaagcccatcagcctcggctgctcccacaccgtctgccagagc
tgcctgagtaagctgcaccgcaaggcctgccctttcgaccagaccgccatccacaccgac
atcgatgtgctgcccgtcaactttgcgctgctccagttagtgggagcccaggtgcccaat
cgccaggcgctcaagctgagtaaccttggagaagacaagcactatgaggtggcgaagaaa
tgcgtggaagatctggccctctatttaaagccgctgagcggaagtaaaggtgtggctagc
ttaaatcagagcacgctgagccggccgatgcaacggaagctggtgaccctggtcaactgc
cagctggtggaagaagaaggccgcatcagggccatgcgggcagctcgctcgctcggggaa
aggaccgtcaccgagctgatcttggcacaccagaatcctcagcaactctcggccaatctc
tgggccgctgtccgggccagagggtgccagttcctcgggccggctatgcaggaggaagcc
ttgaaactggtcctgctggcgctggaagacggctcggccctctcccgcaaagtcctggtg
ctgtttgtggtccagcgcctggagcccaggttcccccaggcatcgaaaaccagcatcggc
cacgtggtgcagctgctctatcgggcgtcctgcttcaaggtcaccaagagggacgaggac
tcctccctgatgcagctgaaggaggaattccgcagctatgaggcattgaggagggagcac
gacgctcagatcgtccacatcgccctggaagccggcctccggatctctcccgagcagtgg
tcctccctcctctacggcgacctggcccacaaatcccatatgcagtccatcatcgataag
ctccagtctccggagtcctttgcgaaaagcgtgcaagaattaaccattgttctgcagcga
acgggagaccccgccaacctcaatcggctgcgtccccatttggagttcttggctaacata
gatcctaatccagatgccgcgtctccaacgtgggagcagctggaaaacgccacggtggcc
gttaagactgtggtgcgtggccttgtggatttcatccagaaccacagcagaaaaggcccc
gaaattccacagccacagccgaacagcaagtataaaacaagcctctgccgcgacctcaga
cagcagggcgggtgtcctcgcggaaccaactgcaccttcgctcactcgcaggaggagctg
gagaagtatcggttaagaaacaagaaaatcggtgccgtcaccgcgagacccttccctctg
ctcgggaaagccagcatcacaagcgccatcccccccaccgcggggaatgtcattcccatc
ataggaaacacggatccagcaggaaaggcagtgtccaacatcaacaggagccccagtccg
gagagcgtcggcccccagctgattccccgttgtatcaacagcccttcgttacggactctg
gagcacgtgaagaaaggggggaaggccgtggcaaatggccagaaccccactttgtctccc
aacgagcctctgcctgaacatcaaaccggctcctctccgaaaacgcctgtgagccagacc
tcagctacctcagcaggccccattcctcctccccctcctcctcttcctccctcccctgcc
cttgcgggcagtgagataagcccccttgcccccaaacccagccctttcaccgcccgcctg
cccatctacccggctcactcggagagccttccgtatttccaggatccacgggctcacctc
tcctacgaagctccaccttaccctcaaacaggatactatccaggccccccggcggtcccc
acagctgtgccgccgtgcctccctcgctttgtgaggtccagcagcgtctcggaatcccct
ctcccgccggcctctctaccgtatagtgagcattacagcacatttccttctcgggacaga
ctcaccgctgcttaccaacaggcaccaccgcagccagcctacgggccggtgccgccggtt
ccttccgggatgtacgctccggtttacgacagccggcgtatttggcgaccgccgatgtac
cagagggatgatatcatccggagcaactccttacctcccatggaagtcacccacccctcc
gtctatcacaactttctgcgggaaagatacggctctttggacagctactgttcggtgccc
tgccaggtgccagcggagcagagggccgtgccttgggcgagggaaccttgtggacatctg
aagccggcctacgaggaccctctcaggaagaaggcagaacagtgggctccttgccacgtg
ccgaaagtgcccctggtgacaacttccactcttcctgcagccgcagcctctccgtcctct
ccttcccctctcttctgtgtggacttcagttctgaattcagcgagaactccagcggctcg
agcgacaccaagtatgaagatgggcagctgtgccagtactcgccctggtcctgcagcacc
atcagttcatgcatcagcgcggttgaggctgaaccgaaggacgtcctggctaaatccacc
acaatcctcctagatctggacagcggagatcccaagaggccggcagcgcacctctttgaa
acccagaggaaggccaaggacgaagatcccatcatccctttcagtgacgggccaatcatt
tccaagtggggcgccatctccaggtcatcacggacgggctaccacaccacagaccctgtc
caggcaactgcttcccaaggaagtactaccaaacccatcagcatgtcagattatatcccc
agcatcagctcggtggacttgaggtggagctgctacgcgtccgattcaacttcctcagca
cctttcatagaacgggaccagtttgtctctcccgaggaatccgctcccaaaaagcactcg
agcaccggagacctcctgagcactgaattacaacaggccaaacgtaactcggtgctgctc
cagagagaggccaacgccttggccacgcagcagaagtgggactccctgagcgaaggcagt
gccctcaccttaaagctcttaagcaaggaaatggagctgaggaatgggcaggccgactcc
cccgagggcaacacgggcaccaagtctaaacgagacattgagctggaactttcgtcgctt
gacacggatgaggccgaggggcagggagagccaatggaagagatgctgggcctccagctt
ggcacgaacagtcagaacgatcacctcttcagtgggtcggctctggagaacggtcaccct
gcggagcagcccccaatggacgccaggcaggccaagaggccattcctccatgaagaactt
gctcttttggagaagcggaagggagtctcgccggccgcgtcctgtttcagccaaccgacg
gagtcctccgcaggcagcaggatctccctgcccatcatgaccacgtcggccggcatgcgc
agccttcttctcaaaacagcccatggcatcgtggaagggcaaaatgactttttaaggccg
atcgcaaacggcaaaatgctgaacacaggcaagagcgatggttcctga
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