Pituophis catenifer annectens (San Diego gophersnake): 139326531
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Entry
139326531 CDS
T11059
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139326531 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcae03041
]
139326531 (PRPF8)
Spliceosome [BR:
pcae03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139326531 (PRPF8)
Complex C
U5 SnRNP specific factors
139326531 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
139326531
NCBI-ProteinID:
XP_070812622
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAGVFPFRGPCPPMPTPLTPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDLATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMAENPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagtcttccctttccggggcccttgccccccaatgcctacacccttgactcca
ttgcccgactacatgtcggaggagaaattgcaggagaaagcccgcaaatggcagcagctg
caggcaaagcgctatgccgagaagaggaaatttggctttgtggatgcccagaaggaggac
atgccacctgaacacgtgaggaagatcatccgtgatcacggagacatgaccaacaggaaa
ttccgtcatgacaagcgagtgtatttgggggccctgaagtatatgccccacgcagttctg
aagctcctggagaacatgccgatgccctgggagcagatccgggatgtgcctgtcctctat
catatcactggggccatttcctttgtgaacgagatcccatgggtgatcgagccggtgtat
atcgcccagtgggggtccatgtggatcatgatgaggcgggagaagagggaccggcggcat
ttcaagcgaatgcgcttcccgccctttgatgacgaagagccccccctcgactacgcagac
aacatcttggacgtggagcccctggaggccatccagctggagctggacccagaggaagat
gctcccgtcttggactggttctatgaccaccagcccctgaaggacagccgcaagtatgtc
aacggctccacctaccagcgatggcagttcaccctccccatgatgtccaccctctatcgc
ctggccaaccagctcctcacggatctcgtggacgacaactacttctacctcttcgacctg
aaggccttcttcacctccaaggccctcaacatggctatcccgggggggcccaagtttgag
cccctggttcgagacatcaacctgcaggacgaggactggaatgagttcaatgacatcaac
aagatcatcatccggcagccgatccggactgagtacaagattgccttcccctacctctac
aacaaccttccccaccacgtccacctcacctggtatcacacccccaacgtggtcttcatc
aaaacagaggatccagacctgccagctttctactttgatcctctcattaaccccatttca
cacagacattcagttaagagccaggagccactccctgatgacgacgaggagtttgagctg
ccagagtttgtggagcccttcctcaaagagacccctctttacacggacaacacggccaat
ggcatcgccttgctctgggcaccgcggccctttaacttgcgctctggccgcacccggcga
gccctcgacatacctctggtcaagaactggtaccgagagcactgccctgccgggcagcct
gtgaaggtgcgggtctcttaccagaagctcctgaagtactacgtcctgaacgcgctcaag
cacaggccccccaaggcgcaaaagaagagatacctcttccgctccttcaaggccaccaag
ttcttccagtccaccaagctggactgggtggaggtggggctgcaggtctgccgtcagggc
tacaacatgctcaaccttctgatccaccgcaagaacctcaactacctccacctggactac
aacttcaacctgaagcccgtcaagaccctcaccaccaaggaaaggaagaagtctcgcttt
ggcaacgccttccacttgtgccgggaggtgctgcgtctgaccaagctggtggtggacagc
catgtccagtacaggctaggaaatgtggatgccttccagctggcagacggcctccagtac
atctttgctcacgtggggcagctgactgggatgtaccggtacaaatacaagctgatgagg
cagatccggatgtgcaaagacctcaagcacctcatttattaccgcttcaacacagggcca
gtggggaagggccccggctgtggtttctgggctccaggctggcgtgtgtggctcttcttc
atgagagggattacacctctgctggagcgatggctcgggaacctcctggccaggcagttt
gaaggccgccactcaaagggggtggccaagactgtcaccaagcagcgggtggagtcccac
ttcgacctggagctgcgggcggcagtgatgcacgacatcctggacatgatgcccgagggg
atcaagcagaacaaggctcggaccatcctgcagcacctgagtgaagcatggcgatgctgg
aaggccaatatcccttggaaggtcccggggctgccaactcccatcgagaacatgatcttg
cggtacgtgaaggccaaagcagactggtggaccaacacagcgcattacaaccgggagcgc
atccgtcgcggggccactgtggacaagacggtctgcaagaagaacctgggccgcctgact
cgcctctacctgaaggccgagcaggagaggcagcacaactacctgaaggatggtccctac
atcaccgcagaggaggctgtggctgtttataccaccacggtgcactggctggagagtcgg
cgcttctcccccatccctttccctcccctctcctacaagcatgacaccaagctcctgatc
ttggccctggagaggctgaaagaggcttacagtgtgaagtctcgtctgaaccagtcccag
cgggaggagctgggcctgatcgagcaggcctacgacaaccctcatgaggccctttcacgc
atcaagcgacatttgctgacccagcgagccttcaaggaggtgggcatcgagtttatggac
ctctacagccatctggtccctgtctatgatgtggagcctctggagaagattacagatgcc
tacctggaccaatacctgtggtacgaggctgacaagagacgtctcttccctccgtggatc
aagccagctgacacagagccccctccgttgctagtatacaagtggtgccagggtattaac
aacctgcaggacgtgtgggagaccagcgaaggggagtgcaacgtcatgctcgagtcccgc
tttgagaagatgtacgagaagatcgacttgacgctgcttaacaggctgctgcgtctcatt
gtcgaccacaacatcgccgactacatgaccgccaagaacaacgtggtcatcaactacaag
gacatgaaccacaccaactcctatgggatcatccggggcctgcagttcgcctccttcatt
gtccagtactatgggctggtgatggatctgctggtgcttggcctgcaccgggccagtgag
atggccggtccaccgcagatgcccaatgacttcctcagcttccaagacttggccacagag
gtggcccacccaatacgcttgttctgcagatacatcgaccgcatccacatcttcttcaga
ttcaccgcggatgaggccagggacctgatccagcgttacctgactgagcacccggatcca
aacaacgagaacattgtaggctacaacaacaagaagtgctggcctcgtgacgctcgcatg
cgcctcatgaagcatgacgttaacctgggccgcgctgtcttctgggacatcaagaaccgg
ctgccgcgctccgtcaccacagtgcagtgggagaacagctttgtgtctgtgtacagcaag
gacaacccgaacctactcttcaacatgtgcggctttgagtgtcgcatcctgcccaagtgc
cggacaagctacgaagagttcacccacaaggacggcgtgtggaacttgcagaatgaggtg
accaaggaacgcaccgcacaatgtttcttgcgagtggacgatgagtccatgcagcggttc
cacaaccgggtcaggcagatcctgatggcctcaggctccaccaccttcaccaagattgtg
aataagtggaacacggccctgatcggcttaatgacctacttccgagaggccgtggtgaac
acccaggagctgctggacttgctggtgaagtgtgagaacaagatccagactcggatcaag
attggcctgaactccaagatgcccagccgcttcccacccgtggtcttctacacccccaag
gagcttggggggctgggcatgctatccatgggccacgtcctgatccctcaatctgacctc
aggtggtccaagcagacggatgtgggtatcactcacttccggtccgggatgagccacgag
gaggaccagctgatccccaatctgtaccggtacatccagccgtgggagagcgaattcatc
gactcccagcgagtgtgggccgaatatgccctcaagcggcaggaagccattgctcagaac
aggcgcctgaccctggaggacctggaggactcgtgggacagaggcatcccacgcatcaac
accctcttccagaaggaccggcacactctggcctacgacaagggctggagagtcaggacg
gatttcaagcagtaccaggtgctgaagcagaaccccttctggtggacccaccagcgccat
gacgggaagctctggaacctgaacaactaccgcacggacatgatccaggccctgggcggg
gtggagggcatcctggagcacacgctcttcaagggcacctacttccccacctgggagggg
ctcttctgggaaaaagccagtggcttcgaggagtccatgaagtggaagaagctgaccaat
gcccagcgttcgggtctcaaccagatccctaaccgaaggttcaccctctggtggtctccc
accatcaacagggccaacgtgtacgtgggtttccaggtacagctggacctgactggcatc
ttcatgcacggcaaaatccccacgctgaagatctccctgatccagatcttccgggctcac
ttgtggcagaagatccacgaaagcattgtcatggacctctgccaggtgtttgaccaggag
ctggacgccttggagattgagacggtgcagaaagagaccatccaccccaggaagtcctat
aagatgaactcctcctgcgcggacatcctcctcttcgcctcttacaagtggaacgtctcc
cggccttccctgctggcagactccaaggacgtgatggacagcaccaccacccagaagtac
tggatcgacatccagctgcgttggggagactatgattcacacgacatcgagcgttacgcc
cgggcaaagttcctggactacacgacggacaacatgagcatctacccctcccccactggg
gtcctcattgccattgacctggcctacaacctgcacagcgcctacgggaactggttccct
ggaagcaagccgctgatccagcaggccatggccaagattatgaaagccaaccccgccttg
tatgtgctgagggaacggatccgcaaggggctgcaactttactcctcggagcccaccgag
ccctacctgtcctcacagaactacggggagctcttctccaaccagatcatctggtttgtg
gacgacaccaatgtctacagggtcaccatccacaagaccttcgaggggaacttgacaacg
aagccaatcaacggggccatcttcatcttcaaccctcggaccgggcagctcttcttgaag
atcatccacacttccgtctgggctgggcaaaagcgtttgggccagctggccaagtggaaa
acagcggaggaggtggcggctctgatccggtccctgcctgtggaggagcagcccaagcag
attatcgtcacccggaagggcatgttggatcctttggaggtgcacttgctggacttcccc
aacatcgtgatcaaaggctcggagctgcagctgcccttccaggcctgcctgaaggtagag
aagtttggggacctcatcttgaaggcaaccgaaccccagatggtcctcttcaacctttac
gatgactggctgaagaccatctcttcctacacggccttttcccgcctgatactcatcctg
agggcgctgcatgtcaacaacgatcgggccaaagtcatcctgaagccggacaagaccacc
atcaccgagcctcaccacatctggcccaccttgaccgatgaggagtggatcaaagtggag
gtgcagctgaaggacctgatcttggccgactatggcaagaagaacaatgtgaatgtggct
tccttaacccagtctgagatccgggacatcatcctcggcatggagatctcagccccctcc
cagcagcgtcagcagatcgcagagatcgagaagcagaccaaggagcagagccagctgaca
gccacccagacgcggacggtcaacaagcacggcgacgagatcatcacctctaccaccagc
aactacgagacccagaccttctcctccaagaccgagtggcgggtcagggccatctctgca
gccaacctgcacttgcgcaccaaccacatctacgtctcctcggacgacattaaagagacc
ggctacacctacatcctgcccaagaacgtcctgaagaagttcatctgcatctccgacctg
cgagctcagattgcaggctacctctatggggtgagccccccagacaacccccaggtgaag
gagattcggtgtattgtgatggtgcctcagtggggaacccatcagaccgtccacctcccc
ggccagctgccccagcatgagtacctcaaggaaatggagcccctggggtggattcacacc
cagcccaacgagtctccccagctctccccacaagacgtcaccacccacgccaaagtcatg
gccgagaacccctcctgggacggggagaagaccatcatcatcacctgcagcttcactcca
ggctcctgcaccttgaccgcctacaagctgacccccagcggctacgagtggggccggcag
aacacagacaagggcaacaatcctaagggctacctgccctcccactacgagcgggtgcag
atgctgctctcggaccgcttcctgggcttcttcatggtgccgggccagagctcctggaac
tacaacttcatgggtgtccggcatgaccccaacatgaagtacgagctgcagctggccaac
ccgaaggaattctaccatgaggtccatcgcccctcccacttcctcaatttcgcccttctg
caggaaggggaggtctactcagcagaccgggaggacctctatgcctag
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integrated database retrieval system
