Pituophis catenifer annectens (San Diego gophersnake): 139327521
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Entry
139327521 CDS
T11059
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcae03009
]
139327521 (IGHMBP2)
03012 Translation factors [BR:
pcae03012
]
139327521 (IGHMBP2)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139327521 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
139327521 (IGHMBP2)
Ribosome biogenesis [BR:
pcae03009
]
Eukaryotic type
Other ribosome biogenesis factors
139327521 (IGHMBP2)
Translation factors [BR:
pcae03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
139327521 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
ResIII
Helicase_RecD
DEAD
nSTAND3
AAA_16
AAA_22
UvrD-helicase
SLFN-g3_helicase
Flavi_DEAD
AAA
IstB_IS21
AAA_25
ATPase
NTPase_1
PhoH
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
139327521
NCBI-ProteinID:
XP_070813466
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MAASVEEFVSRQMELLKEEREAEISEARAWQEGISLKELQRKGVCLLKLELHCQKTGLYG
HLLVTLQPQKRGLDTELPSNSFGPGDIVGLYEAAGQNNQICTGIVTRKASNSITIAVDEP
QSNLVSLDQENLYRLLKLANDVTYNRLKRALSTLNHYGSGPASDLIDVLLCSSEPSGASD
TKLLKFYDESLDASQKEAVCFSLAQKELALIHGPPGTGKTTTVVEIILQAVEQGLKVLCC
APSNIAVDNLVERLSDHKVRILRLGRPARLLGSIQHHSLDAVLMRGDNAQIVADIRKDID
QAFMKTRKTQDKGERKHFFNEIKILRKELKEREEMAMSETLQKAHVILATNTGASSDGPL
KLLPENHFDLVVIDECAQALEASCWIPLLKVRKCILAGDHKQLPPTIISHKAAAQGLSLS
LMERLIQKWGDRVVKMLTVQYRMHQAIMQWASTEMYDGHLSAHSSVAQHLLKDLPGVAPT
EETSIPLLLIDTAGCGLFELEVEEEQSRGNPGEVQLTSLHIDALIEAGVKAKDVAVIAPY
NLQVDMLRKHLYQKYPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAI
TRARRHVAVICDSRTVSNHSFLKRLVEYMNTHGEVRTAFEYLDDIVPGNYTSKSSLGPRN
QEKRLKCNIGPVPKALGEKPKGRPAQKPRERLTECSLENTGKVTTSKTKENENSFKHKAR
ILEFLDSGEVQLDFPSSLNAHDRMLIHQLAEEYGLQHMSTGEGSARHISIRRRDSPTELS
LGGTVVCQPELIQGCPKEIDAGSEERESGAGPGATDLKTLHVERMQREREKKEERVKQSR
ESNVNLQEIIGKKEKDVGGKASSKSKKEIEAKEDFDAMISAAIKADNTCGFSKCKASVTT
LGQLCQHCNRRYCLSHHIPEVHGCGEKAKANARQRISKEGILYPGSGMKDKSLDPTKRAH
LQRRLDQKLSELSKQRKSKRKDREK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtcggtggaagagtttgtgtcccggcaaatggagttgctaaaggaggaaaga
gaggccgaaatttcggaagcaagagcatggcaagaaggaatctccctgaaagagctgcag
cgcaaaggagtttgcttactgaagcttgaactacattgtcaaaaaactgggctatatggc
catctgcttgtaactttacagccgcaaaaacgtggcttagacacagagttaccttccaat
agttttgggcctggtgacatagtgggactttatgaagcagctggacaaaataatcagatc
tgcacaggaattgtcacccggaaagcctccaattcaattactatcgcagttgatgagcct
cagagtaaccttgtgagtttagatcaggagaatttgtaccgtctgttgaaacttgccaat
gatgttacatacaacagactcaaaagggctttaagtacacttaatcactatgggtctggt
ccagcatctgatcttattgatgtgctgttgtgttcttctgaacctagtggtgccagtgat
acaaagcttttgaagttctacgatgaatccctggatgcctctcagaaggaggctgtttgc
ttttcattggcacagaaggaacttgctctcatccacggaccacctggaactggcaagacg
acaactgtggtagagataatactccaagctgtggagcaaggcttgaaagttctctgttgt
gctccctctaacattgcagtcgataacttggtggaaaggctctctgatcataaggtgcgg
atcctgcgtctgggtcgcccagctcgtctcctggggtccatacagcaccattcactggat
gctgtcctgatgcgtggagataatgcccagattgtagcagatatcaggaaagatattgat
caagcattcatgaaaaccaggaagacccaagacaaaggagagagaaaacatttttttaat
gaaattaagatactgagaaaggaactgaaggaacgagaagaaatggctatgtctgaaact
ttgcaaaaagctcatgttattcttgctacgaacacaggtgcttcttctgatggtccgttg
aagcttcttcccgagaaccactttgatcttgtggtgattgatgaatgtgctcaagctctt
gaagcaagctgttggatcccactgctgaaggttaggaagtgtatcctggctggtgatcac
aaacagctgcctcccacaatcatctctcacaaggctgctgcacaaggtctttctcttagt
ttaatggaacgtctgattcagaaatggggagaccgtgttgtgaagatgctcactgtgcag
taccgaatgcaccaagctataatgcaatgggcttccactgagatgtatgacggtcatcta
tcagctcactcttctgttgcacaacatttactgaaagacttgccaggagtggcccccaca
gaagagaccagtatcccattgctgcttatagatacagctggttgtggcttatttgaactt
gaagtggaagaagaacaatctagaggaaacccaggtgaggtacagcttaccagtttgcat
atagatgctttgattgaagctggtgtgaaagcaaaagatgtagctgtcattgctccttac
aatcttcaggtggacatgctaagaaaacatctgtatcagaagtatccagagctagagatt
aaatcagtggatggcttccaaggaagagaaaaggaagcagttgttctttcttttgtaaga
tccaatagaaaaggtgaagtgggattcctcgccgaagacaggagaataaatgttgcaatt
acccgggcccgacgtcatgtggctgtaatctgtgactctcgcaccgttagcaatcacagt
tttcttaaacggctggtggagtatatgaacacccatggagaagtgcgcacagcctttgaa
tatctggatgatattgtacccggaaactacacttccaagagttctttgggtccccgtaac
caggaaaagagacttaaatgcaacattggtccagtcccaaaagctcttggagagaaacca
aaaggaagacctgcccaaaagcctagagagaggctaacagaatgttccctggaaaacacg
ggcaaagtcacaacatcaaaaaccaaagagaatgaaaactcatttaaacataaagcaaga
atattggagtttctggatagtggtgaggtccaactggatttcccttcctctttaaatgct
cacgatagaatgcttatccatcagttggctgaagaatacgggctgcagcacatgagcaca
ggagaaggcagtgcacgacacataagtattcgtaggagagattctcccacagaattatct
ttgggaggtactgtggtttgtcaacctgaattaattcagggctgtccaaaagaaatagat
gcaggcagtgaagagagggagagcggtgctggcccaggggccacagacctaaaaacgttg
catgtggaacggatgcaaagagagagagagaagaaagaagagagagtgaaacaaagccga
gaatccaatgtaaatcttcaggaaataattgggaagaaagaaaaagatgttggaggaaag
gcatccagtaaatccaaaaaggaaatagaagccaaggaagattttgatgctatgatctct
gcggcaattaaagcagacaacacatgtggcttctccaaatgtaaagccagtgtaacaacc
ctgggacagctctgccagcattgcaacagacgctactgtctcagccaccatatcccagag
gttcacggatgtggggagaaagccaaagcaaatgcccggcagagaatcagcaaggaaggg
attctctatcctgggagtgggatgaaggacaagtccttggatcctaccaagagagctcac
ctccagagacgcttggaccagaaactcagtgaactgtccaaacagcgaaaaagcaaaagg
aaagatagagagaaataa
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