Paraburkholderia caffeinilytica: DSC91_000273
Help
Entry
DSC91_000273 CDS
T06448
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC91_000273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaf03019
]
DSC91_000273
Enzymes [BR:
pcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSC91_000273
Messenger RNA biogenesis [BR:
pcaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSC91_000273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXL48749
LinkDB
All DBs
Position
1:complement(270037..271482)
Genome browser
AA seq
481 aa
AA seq
DB search
MSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGRDVMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMQ
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFTDDIHAMAAGILRGPVNISVSPPNATASKIKQWVVTVDKKNKPDLFMHLVA
ENSWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPQTSATGQIIKKPKKPKKPKVPQAAPGAMQVPNKKPRPQ
SSENKRKPAAQRAVAAGKGTSLSSGSPFSVQKPRSKPAGKPAAGSHKQAGKPAGGRGKRQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgcttggcctgattgatcccttgctgcgtaatgtgcaggacctcaat
taccagacacctacaccggtgcaggccaaggcgattcctgctgtgctcagtggccgtgac
gtcatggctgcggcacagaccggcactggcaaaacagcgggctttgcgctgccgctgttg
caacggctggtgcaacacggccccgcggtgtccagcaaccgcgcgcgtgttctggtgctg
gtgcccacgcgtgaactggccgaacaggtgctgcaaagctttatcgcttacggcaaaggt
ctcgacctccgatttctggccgcctacggcggtgtgagtatcaacccgcagatgatgcag
ttgcgcaaaggcgtggatgtgctcgtcgccacgccgggccgtttgctagatctcaatcgc
cagaacgcagtgcagtttgatcaagtgcaaacgctggtgctggatgaagccgaccgcatg
ctggatctgggctttgcgcgcgaactcaacgccgtctttgccgccttgcctgctcagcgc
cagaccttgctgttctccgccacgtttaccgatgatatccacgccatggcggcgggcatt
ctgcgcggcccggtcaatatcagcgtcagcccgcccaatgccacggccagcaagatcaag
cagtgggtggtgacggtggataaaaagaacaagcctgacctcttcatgcaccttgtggct
gagaacagctgggagcacgcgcttgtgttcgtcaaaacccgcaatggcgtggattacctg
gcggcgatgctggatgaagccggctatgcggtcgacaccatccacggcgacaaaccgcag
cccgcgcgcctgcgtgcgctggagcgcttcaagacgggcgaagtacagatgctggtagcc
accgatgtggctgcgcgcgggctggatatcgacgacctgccgctggtgatcaacgtcgat
ctgccgatcgtggcgcaagactacgtgcaccgtattggccgtaccggccgcgcgggcgcc
agcggcgtggcggtgtcccttgtgtgtgcggatgaagcgccgcaactggccgcgattgaa
gcgctgatccggcaaacgctgcgccgtgaagaagagccgggttttgaagccgaacaccgc
gtgccgcaaactagcgcgacgggccagatcatcaagaaacccaaaaagcctaagaagccg
aaagtgccgcaagctgcgccgggcgccatgcaggtgcccaacaaaaaaccgcgtccgcaa
agtagcgaaaacaaacgcaagcccgcggcgcagcgcgctgtggccgcgggtaaaggcaca
agcttgtccagcggtagcccattcagcgtgcaaaagccacgcagcaaacccgccggcaag
ccggctgcgggctcacacaagcaggctggcaaacccgctggcggccgcggcaaacgccaa
ccctga
DBGET
integrated database retrieval system
