Paraburkholderia caffeinilytica: DSC91_001249
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Entry
DSC91_001249 CDS
T06448
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DSC91_001249
09124 Replication and repair
03420 Nucleotide excision repair
DSC91_001249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcaf03021
]
DSC91_001249
03036 Chromosome and associated proteins [BR:
pcaf03036
]
DSC91_001249
03400 DNA repair and recombination proteins [BR:
pcaf03400
]
DSC91_001249
Enzymes [BR:
pcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
DSC91_001249
Transcription machinery [BR:
pcaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DSC91_001249
Chromosome and associated proteins [BR:
pcaf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
DSC91_001249
DNA repair and recombination proteins [BR:
pcaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DSC91_001249
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
TMEM218_N
Motif
Other DBs
NCBI-ProteinID:
AXL49437
UniProt:
A0ABQ1MVG7
LinkDB
All DBs
Position
1:1315315..1317591
Genome browser
AA seq
758 aa
AA seq
DB search
MTYVVAVRAMCEFTARRGDLDLRFTPAPTSLEGMAGHVTVAGRRASGYETEITLTGTHRG
LTVRGRADGYDAASNRLEEVKTHRGALERIPANHRALHWAQALVYGHLLCRARGLAELTV
ALVYFDIGSQKETLLTETHTARELEIFFVEQCERFLDWAVQEEAHRAARNAALSALPFPH
GRFRSGQRELAVSVYRAARDGKPLMAQAPTGIGKTLATIFPLLKACASDQIDRVFFLTAK
TPGRALALDAIETLHRSAAPSSARLPLRTLELVARDKSCEHPDKACNGESCPLARGFYDR
LDAARSAALAGPRLDRASVREAALRHDVCPYYLAQELARWCDVVVGDYNYYYDSSAMLYA
LTQINQWRVGVLVDEAHNLLDRARRMYSASLDQAAFRLARKTAPATLKRPLERLQRAWNG
VKRAQTDTYQVYADVPANLLSAAQNLIGAVTDQLAEAPLSIDEASLRFFFDAMHFVALAE
QFGDHSIFDITLAADRTAPRGKTGATLCVRNVIPAPFLAGRYAAARTTVMFSGTLNPHHF
YRDTLGLPEQTNWLDVEGPFRAEQLQVRVAGNVSTRWRDRERSLVPIVDLIARQYAGQPG
NYLGFLSSFEYLQQVVAMMRERHPALPVWVQEPGMDEAARDAFLARFRTMNEGVGFAVLG
GAFSEGVDLVGQQLIGAFIATLGLPQMNDVNEQMRRTMDAKFGNGYDYMYLYPGLQKVVQ
AAGRVIRTEQDQGVVHLIDDRYRRPEVRRLLPRWWQVQ
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgacctacgtggtcgccgtgcgggcgatgtgcgaattcaccgcgaggcgcggcgatctg
gatctgcgcttcacgcccgcgcccacctcgctggaaggcatggccggccacgtgactgtc
gccgggcgtcgcgcgagcggctacgaaaccgagattacgctgaccggcacgcatcgcggc
ctgaccgtgcggggccgggccgacggctacgacgcggcgtcgaaccggctggaagaggtc
aagacccatcgtggcgcgcttgaacggatccccgccaatcatcgcgctctgcattgggcg
caggcgctggtgtacggccatctgctgtgccgtgcccgcgggctggccgaattgacggtc
gcgctggtgtacttcgatatcggcagccagaaggagacgttgctgaccgaaacgcacacg
gcgcgcgagttggagattttcttcgtcgagcaatgcgagcgctttctcgattgggcggtg
caggaagaggcgcatcgcgccgcgcgcaatgccgcgctcagcgccttgccatttccgcat
ggccggtttcgcagcggtcagcgtgaactggcggtgtcggtgtatcgcgcggcgcgtgac
ggcaagcccttgatggcgcaggcgccgaccggcatcggcaagacgctggcgacgattttt
ccgctgctcaaggcgtgtgcatcggaccagatcgaccgcgtgttcttcctcaccgcgaag
acgcctggccgcgcgctcgccctcgatgcgatcgaaacgctccatcggagcgccgcgccg
tcctccgcgcgcttgccgttgagaacgctggaactggttgcgcgcgacaagtcctgcgag
catcccgacaaggcttgcaatggcgagtcctgtccgcttgcccgcggcttctacgaccgg
ctggacgcggcccgcagcgcggcgttggccgggccgcggctcgaccgggcgtcggtgcgc
gaagcggcgctccggcacgacgtctgcccgtactatctcgcgcaggaactggcgcgctgg
tgcgacgtggtggtcggcgactacaactactactacgacagcagcgcgatgctgtacgcg
ctcacgcagatcaatcagtggcgcgtcggcgtgctggtcgacgaggcgcacaacctgctc
gaccgggcgcggcgcatgtacagcgcgtcgctcgatcaggcggcgttccggctcgcccgc
aaaaccgcgcccgcgacgttgaagaggccgctcgaacggcttcagcgcgcatggaacggc
gtcaagcgcgcacagaccgacacctatcaggtctatgccgacgtccccgccaacctgctc
tcggccgcgcagaatctgatcggcgcggtgacggatcaactcgccgaagcaccgctttca
atcgacgaagcgtcgctgcggtttttcttcgacgccatgcatttcgtcgcgctggcggag
cagttcggcgaccattcgattttcgacatcacgcttgccgcggatcgcaccgccccgcgc
ggcaaaacgggcgccacgctgtgcgtgcgcaacgtcatcccggcgccattcctcgcgggg
cgctacgctgccgcgcgcacaacggtgatgttttcgggcacgctcaatccgcatcatttc
tatcgcgacacgctgggtctgccggagcagaccaactggctcgacgtggaagggccgttc
cgcgccgaacaattgcaggtgcgggtggccggcaacgtatccacgcgctggcgcgatcgc
gagcgttcgctcgtgcccatcgtcgacctgatcgcgcgacagtacgccgggcaaccgggc
aattatctcgggttcctgagcagcttcgagtacctgcaacaggtggtggcgatgatgcgc
gagcgtcatccggcgctcccggtgtgggtgcaggaaccgggcatggacgaggccgcgcgc
gatgcgttcctcgcgcgctttcgcaccatgaacgaaggtgtcggcttcgcggtgctgggc
ggcgcattctccgagggtgtcgatctggtcggtcagcaactgatcggcgccttcatcgcc
acgctcggcctgccgcagatgaacgacgtcaacgagcagatgcgccgcacgatggacgcg
aagttcggcaacggctacgactacatgtatctgtatccgggattgcagaaggtcgtgcag
gccgcaggccgtgtgattcgcacggagcaggatcagggcgtggtgcatctgatcgacgac
cgctaccggcggcccgaagtgcgacgtctgttgccgcgctggtggcaggtgcagtga
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