Paraburkholderia caffeinilytica: DSC91_004396
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Entry
DSC91_004396 CDS
T06448
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
pcaf
Paraburkholderia caffeinilytica
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcaf03032
]
DSC91_004396
03036 Chromosome and associated proteins [BR:
pcaf03036
]
DSC91_004396
03400 DNA repair and recombination proteins [BR:
pcaf03400
]
DSC91_004396
DNA replication proteins [BR:
pcaf03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
DSC91_004396
Chromosome and associated proteins [BR:
pcaf03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
DSC91_004396
DNA repair and recombination proteins [BR:
pcaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
DSC91_004396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
AXL51646
LinkDB
All DBs
Position
2:complement(1137765..1138091)
Genome browser
AA seq
108 aa
AA seq
DB search
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV
GRNPKSGEKVLVPEKYVPHFKPGKELRERVDRRSGEPLKADEPDDDDL
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatcggaattggtcgcccagctggctacgcgatttccgcagcttgtacttaaa
gatgcggatttcgcggtgaagacgatgctcgatgcgatgtcggaggcgcttgccaacggt
catcgcattgaaattcgcggcttcggcagcttcggccttaatcgtcgtccctcccgcgtc
gggcgtaatccgaagtcgggcgagaaggtgctggtacctgagaagtacgtgccgcacttc
aagcctggcaaggagttgcgcgagcgggtagaccgacgttcgggcgaaccgctgaaggcc
gatgagccggatgacgacgacctgtaa
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