Paraburkholderia caffeinilytica: DSC91_005067
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Entry
DSC91_005067 CDS
T06448
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC91_005067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaf03019
]
DSC91_005067
03400 DNA repair and recombination proteins [BR:
pcaf03400
]
DSC91_005067
Enzymes [BR:
pcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSC91_005067
Messenger RNA biogenesis [BR:
pcaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSC91_005067
DNA repair and recombination proteins [BR:
pcaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DSC91_005067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXL52166
LinkDB
All DBs
Position
2:complement(1819780..1821627)
Genome browser
AA seq
615 aa
AA seq
DB search
MSRPLEILNEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPSLVRREAGC
GAGIVVSPLIALMQDQVAALKEVGVRAAYLNSTLSSAEAMATERALREGEIDLLYVAPER
LMTPRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPNVPRIALTATAD
AITRDEIIHRLALDDARIFVSSFDRPNIRYRIVEKDNARTQLLDFIRAEHSKPDGTTDAG
VVYCLSRRKVEETAEWLKEKGMRALPYHAGMEFEIRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKMIDESDADD
AHKRVQTGKLDALLGLCEAANCRRVRLLAYFGESSKPCGNCDNCIEPADTWDATREAQMA
LSCVFRAQRASGFHFGAGHLIDILRGNRSEKILQRGHEKLTTFGIGAALGEPEWRAIFRQ
LVAFGYLTVDHEGFGSLVLTEAAKAVLKSEQSVTMRRYVKPTRTRQSSGRTSERADPTIG
MGPRERARWERLRAWRTETAKSDGVPAYVIFHDATLAEIARNGPDSIEDLRGIPGMGARK
LDRFGDELLEVVAAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtccgctcgaaatcctcaacgaagtttttggctatcccgcattccgaggacag
cagggcgaaattgtcgaacacgtcgccggcggcggcgattgcctcgtgctgatgccaacg
ggcggcggcaaatcgttgtgctatcagatcccgtcgctggtgcggcgcgaagcgggctgc
ggagcggggatcgtcgtgtcgccgctgatcgcactgatgcaagaccaggtcgctgcgctg
aaggaggtgggggttagggccgcgtatctgaattccacgctgtcgagcgccgaggcgatg
gccacggagcgcgcactgcgcgaaggcgaaatcgatctgctgtacgtggcgccggaacgg
ttgatgacgccccgtttccaggagctactcgagcgcacgcgcatcggcctgttcgccatt
gacgaagcgcattgcgtgtcgcaatggggtcacgatttccgtcctgaatatattcaattg
tcggtgctgcacgagcgttttccgaacgtaccgcgcatagcgctcaccgcgacggccgac
gcgattacgcgcgacgaaatcattcaccgtctcgcgctcgatgacgcgcgcatttttgta
tccagcttcgatcgtccgaacatccgctatcgcatcgtcgaaaaggacaatgcacgcacg
caactgctcgacttcattcgcgccgaacactcgaaaccagacggtacgactgacgccggc
gttgtctattgcctgtcgcgccgcaaggtcgaagaaacagcggagtggctgaaagagaag
gggatgcgcgcgttgccgtaccacgccggcatggagttcgaaatccgccagaagcatcag
gagatgttccagcgcgaggagggcatcgtgatgtgcgcgacgatcgcgttcggcatgggc
atcgacaagccggatgtgcgcttcgtggctcacctcgatttaccgaagagtgtcgaaggt
tactaccaggaaaccgggcgcgccggccgcgacggtatgccggccaatgcgtggatggcg
tacggtctgggcgacgtcgtgcagcagcgcaagatgatcgacgagtccgacgcagacgat
gcgcataagcgcgtgcagaccggcaagctcgacgcgttgctcggactgtgtgaagcggcg
aactgccgccgggtgcggctgctcgcgtacttcggcgagtcgagcaagccgtgcggcaat
tgcgacaactgcatcgagccggccgacacatgggacgcgacgcgggaggcgcagatggcg
ctgtcatgcgtgttccgggcgcagcgggcgagtggctttcacttcggcgccgggcatctg
atcgatattttgcgcggcaaccgcagcgagaagatcctgcaacgcggccacgagaagctc
accacctttgggatcggggcggcactcggcgagccggaatggcgcgccatctttcgccaa
ctggtcgctttcggctacctcaccgtcgaccacgaaggtttcggctcgctggtcctgacg
gaggctgccaaagccgtgttgaagagcgagcagagcgtcacgatgcgccgctacgtgaag
cccacgcgtacccgccaatcgtccggccgcaccagcgagcgcgccgacccgacgatcggc
atggggccgcgcgagcgcgcccgctgggaacgcctgcgcgcctggcgcacggagacggcg
aaaagcgacggcgtgccggcctacgtcatcttccacgatgccacgctggcggaaattgct
cgcaacggccccgattccattgaggatttgcgcggtattccgggtatgggcgcgcgcaaa
ctcgaccgttttggtgacgagttgttggaagtcgtcgccgccgattga
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