Paraburkholderia caffeinilytica: DSC91_005068
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Entry
DSC91_005068 CDS
T06448
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSC91_005068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcaf03021
]
DSC91_005068
03400 DNA repair and recombination proteins [BR:
pcaf03400
]
DSC91_005068
Enzymes [BR:
pcaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSC91_005068
Transcription machinery [BR:
pcaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSC91_005068
DNA repair and recombination proteins [BR:
pcaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSC91_005068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
ApbA_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AXL52167
UniProt:
A0ABQ1NEC8
LinkDB
All DBs
Position
2:complement(1821832..1826070)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVELLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNILFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLSFTGVSEVLRAYENK
EVELASRVNVRITEMVHNDDKSEGAPAFVPKISLYATTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVTVADVVNPETQETLYETGMLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKT
VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPVESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALARYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIMGEQVERSDMLDENDRMAAEGKIPATYDNVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKEL
SDRERFDQIAAEESFEFGTPEAPAAEQQHSGE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacagcctgaagtttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgttcgtggtcgttcggtgaagtcaagaag
ccggaaaccatcaactaccggacgttcaagccggaacgcgatggtctgttctgcgcgaag
attttcggaccgatcaaagactacgaatgcctttgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgtgaaaagtgcggcgtcgaagtgacgctcgcgaaggtgcgtcgcgaa
cggatgggtcacatcgagctggcctcaccggtcgctcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtcctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcatacgtggtgatcgatccgggcatgacgccgctgaaagcgcggcagatcatg
acggaagaggattactacaacaaggtcgaagagtacggtgacgaattccgcgccgagatg
ggcgcagaaggtgttcgcgaactgctgcgcgcgatcaacatcgacgaacaggtcgagttg
ctgcgcaccgaactcaagaacacgggttcggaagcgaaaatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggctttccagcgttcgggcatcaagccagactggatggtcctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctggtgccgctggatggcggccgcttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcgcctgaaatcatcgttcgcaacgaaaagcggatgttgcag
gaagccgtcgattcgctgctcgacaacggccgtcgcggtaaggcgatgaccggcgcgaac
aagcgtccgctgaagtcgctcgctgacatgatcaagggtaagggcggtcgtttccgtcag
aacttgctcggtaagcgcgttgactactcgggccgttcggtgatcgtggtcggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactgttcaagccgttc
atcttcaacaagctcgaagtgatgggtgttgctaccaccatcaaggctgcgaagaaagaa
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgaacatccg
gtcatgctgaaccgtgcgccgacgctgcaccgtcttggcattcaggctttcgagccggtg
ctgatcgaaggtaaggctatccagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgtgcacgtgccgctgtcgctcgaagcgcaaatggaagcg
cgtacgctgatgctggcgtcgaacaacatcctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctcggcctgtactacgcgacgcgcgaagccgtgaatgcg
aagggcgaaggcctgtcgttcacgggcgtgtcggaagtgctgcgtgcgtacgagaacaag
gaagtcgagctggcttcacgcgtcaatgtgcggatcacggaaatggtccacaacgacgac
aagtcggaaggcgcaccggcattcgtgccgaagatctcgctgtacgcgacgaccgtcggc
cgcgcaatcctgtcggaaatccttccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgtctgatcaacaccgcattccgcaagtgcggtctgcgt
gaaacggtgattttcgccgaccagttgatgcaatcgggtttccgtctggcaacgcgcgct
ggtatttcgatttgcgtcgacgacatgctcgtgccgccgcaaaaggaaaccattgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcacgtcg
caagaacgctacaacaacgtggtcgacatctggtcggcaacgtcggaagcggtcggcaag
gcgatgatggaacaactgtcgacggaaccggttgtggatcgcgacggcaacgaaacgcgt
caggaatcgttcaactccatctacatgatggcggactcgggcgctcgtggttccgcagtt
cagattcgtcagctggccggtatgcgtggcctgatggcgaagccggacggctcgatcatc
gagacgccgattacggcgaacttccgtgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcgctgaagacggcaaactcgggttac
ctgacacgccgtctggtcgacgtgacgcaggatctggtggtggtcgaggacgattgcggt
acgtccaacggcgtcgccatgaaggcattggtcgaaggcggtgaagtggtcgaagcgctg
cgtgaccgtatcctcggtcgcgtgacggtggctgacgtcgtcaatccggaaacgcaggaa
acgctgtacgaaacgggcatgttgctcgacgaagacgcggtcgaagaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgtacgccgctgacttgcgaaacgcgttacggtctgtgc
gcagcttgctatggccgcgatctgggtcgtggctcgtccgtcaacgtcggcgaggcagtt
ggcgtgatcgctgctcagtcgatcggtgaaccgggcacgcagcttacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcagcagtggcttcgtcggttgaagcgaagtcgaac
ggtacggtgcgtttcacggcaacgatgcgttacgtcaccaacgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaagcgatgatcaccgacgaccacggtcgcgagcgtgaacgt
cacaaggtgccgtacggcgcgacgctgttgcaactggacggcgcgcagatcaaggccggc
acgcaactggcgacgtgggatccgatgacgcgtccgatcatcaccgagtacggtggtacg
gtgaagttcgaaaacgtcgaagaaggcgtgacggtcgccaagcagatcgacgacgtgacg
ggtctctcgacgctggtcgtgatcgacgtgaagcgccgcggttcgcaagcatcgaagacg
gtgcgtccgcaggtcaagctgctcgacgcgaacggcgaagaagtcaagatcccgaacacc
gagcactcggtgcagatcggcttccaggtcggcgctctgatcaccgtgaaggacggtcag
caggtgcaggtcggtgaagtgctggcacgtatcccggttgagtcgcagaagacccgtgac
attaccggtggtctgccgcgtgtggccgaactgttcgaagcgcgctcgccgaaggacgcc
ggcattctggcggaagtcacgggcacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgaaggcaatcagcacgagttcctgatcgcgaaggaaaag
caggttctggtgcacgatggtcaggtcgtcaacaagggcgaaatgattgtcgacggaccg
gctgatccgcacgacattctgcgtttgcagggcgtcgaagcgctggcgcgctacatcgtt
gacgaagtgcaggacgtgtatcgtctgcagggcgtgaagatcaatgacaagcacattgaa
gtgatcgtccgtcagatgctgcgccgtgtgcaaatcgtcgataacggtgacacgcgcttc
atcatgggcgagcaggtcgagcgctcggatatgctcgatgagaacgaccggatggcggcg
gaaggcaagatcccggcaacctacgacaacgtgctgctcggtatcacgaaggcgtcgctg
tcgaccgattcgttcatctccgcggcgtcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcgggctgaaggaaaacgtgatcgttggt
cgtctgatcccggctggtacgggtctcgcgttccacaaggcacgcaagagcaaggaactg
tccgaccgcgagcgtttcgatcagatcgcagcggaagagtcgttcgaattcggtacgccg
gaagccccggccgccgaacagcagcactcaggcgagtaa
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integrated database retrieval system
