Paraburkholderia caffeinilytica: DSC91_005444
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Entry
DSC91_005444 CDS
T06448
Name
(GenBank) ATP-dependent RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pcaf
Paraburkholderia caffeinilytica
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcaf03009
]
DSC91_005444
Enzymes [BR:
pcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSC91_005444
Ribosome biogenesis [BR:
pcaf03009
]
Prokaryotic type
rRNA helicases
DSC91_005444
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AXL52432
LinkDB
All DBs
Position
2:2245314..2246717
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AA seq
467 aa
AA seq
DB search
MNSPTQAGAPFSQLPLPPATLANLTQLGYLEMTPIQAASLPIALEGNDLIAQAKTGSGKT
AAFSLALLNRLDVRNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRP
QTASLEHGAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQC
PKERQTLLFSATYPEGIAKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDQRLHAVGL
LLNHYRPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSV
LVATDVASRGLDIAELEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVG
SLEQAQKREVEWHKLADLKPASNERLLPPMETLQILGGRKEKIRPGDVLGALTGEAGFAG
SQIGKINVTEMSTYVAVERSIARDALRKLSAGKVKGKKVKVRMMDDA
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtcccactcaagccggcgcgccgtttagccagctaccgctaccgcccgccacg
ctcgccaacctgacgcagctcggctacctcgagatgacgccgattcaggccgcgagcctg
ccgatcgcgctggaaggcaacgatctgatcgcccaggcgaaaaccggcagcggcaagacc
gcggcgttttcgctggcgttgctcaatcgcctcgacgtgcgcaacttcgccgtgcaggcg
atggtgctgtgcccgacacgcgaactcgccgatcaggtcacgcaggaaatccgccgtctg
gcgcgcgccgaagaaaacatcaaggtgctgacgctgtgcggcggcacaccgatgcgtcca
cagaccgccagcctcgaacacggtgcgcatatcgtggtcggtacgccgggccggatcatg
gatcacctcgagcgcggcagcctgcccttgcagtcgctcaacacactggtgctcgacgaa
gccgaccgcatgctcgacatgggtttcttcgacgacatcgcgaccgtcgtgaagcaatgc
ccgaaagagcggcaaacgctgctgttttccgcgacataccccgaaggcatcgccaaactc
agccagcaattcctgcgtaatccgaaggaagtgaagctcgccgagcggcacgacaacacc
aagattcgtcagcgtttctatgaagtgaccgaagaccagcgtctgcatgctgtcggtctg
ctgctgaaccactatcgtccggtgagtacgctggcgttctgcaacaccaagcagcaatgc
cgcgatctgctcgacgtgctgcgcgcgcagggttttcatgcgctcgcgctgcatggcgaa
ctcgatcagcgtgaacgcgatcaggtgctgatccagttcgcgaaccgcagctgctcggtg
ctggttgcgacggacgtcgcctcacgcggtctcgacatcgcggagctcgaagcggtgatc
aacgtcgacgtcacgccggacccggaagtacacgtgcaccgcatcggccgcacgggtcgc
gccgatcaggacggctgggcgctgagtctcgccagcatgaatgaaatgggccgcgtgggc
agtctcgaacaggcgcaaaagcgtgaggtcgagtggcacaagctggccgatctcaagccg
gcgagcaacgagcgcttgctgccgccgatggaaacgctgcagattcttggcggccgcaag
gaaaagatccgtccgggcgacgtgcttggcgcgctgaccggcgaagcgggtttcgccggt
tcgcagatcggcaagatcaacgtgaccgaaatgtcgacctatgtggccgtggagcgcagc
atcgcacgcgacgcgctgcgcaagctcagcgccggcaaggtgaaaggcaagaaggtgaaa
gtccgcatgatggacgacgcctga
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