Paraburkholderia caffeinilytica: DSC91_005938
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Entry
DSC91_005938 CDS
T06448
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf00260
Glycine, serine and threonine metabolism
pcaf00460
Cyanoamino acid metabolism
pcaf00630
Glyoxylate and dicarboxylate metabolism
pcaf00670
One carbon pool by folate
pcaf00680
Methane metabolism
pcaf01100
Metabolic pathways
pcaf01110
Biosynthesis of secondary metabolites
pcaf01120
Microbial metabolism in diverse environments
pcaf01200
Carbon metabolism
pcaf01230
Biosynthesis of amino acids
pcaf01240
Biosynthesis of cofactors
pcaf04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
DSC91_005938
09102 Energy metabolism
00680 Methane metabolism
DSC91_005938
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
DSC91_005938
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
DSC91_005938
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
DSC91_005938
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
DSC91_005938
Enzymes [BR:
pcaf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
DSC91_005938
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
AXL52788
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All DBs
Position
2:2743992..2745239
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AA seq
415 aa
AA seq
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MFDRAQSTIANVDPELWKVIEQENRRQEEHIELIASENYTSPAVMAAQGSQLTNKYAEGY
PGKRYYGGCEYVDVAEQLAIDRVKQLFGAEAANVQPNSGSQANQGVFFAMLKPGDTIMGM
SLAHGGHLTHGSPVNMSGKWFNVVSYGLNEAEDIDYDAAETLAQEHKPKLIVAGASAFSL
RIDFERMSKIAKSVGAYFMVDMAHYAGLVAAGVYPNPVPHADFVTTTTHKSLRGPRGGVI
LMKAEFEKQINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQQQVVENARVLAETL
VKRGLRIVSGRTESHVMLVDLRAKKITGKAAEAALGAAHITVNKNAIPNDPEKPFVTSGV
RLGSPAMTTRGFGVKEAEQVGNLIADVLDNPEDAATIERVRAQVAELTQRFPVYR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatagagcccaaagcaccatcgccaacgtcgatcctgaactctggaaggtcatc
gagcaggaaaaccgccgtcaggaagagcacatcgaactgatcgcgtcggaaaactacacg
agcccggccgtgatggctgcgcaaggctcgcaactcaccaacaagtacgccgaagggtat
ccgggcaagcgctactacggcggctgtgaatatgtcgacgtggccgagcagctggcgatc
gaccgcgtgaagcaactgttcggcgccgaagccgccaacgtgcagccgaactccggctcg
caggcgaatcagggcgtgttcttcgccatgctcaagccgggcgacacgatcatgggcatg
agcctcgcgcacggcggtcacttgacgcacggttcgccggtcaacatgtcgggcaagtgg
ttcaacgtggtgagctacggcctgaacgaagccgaagacatcgactacgacgccgctgag
acgctggctcaggaacacaagccgaagctgatcgtggccggcgcgtcggcgttttcgctg
cgcatcgacttcgagcggatgtcgaagatcgccaagtcggtcggcgcgtatttcatggtc
gacatggcgcactatgccggcctggtcgccgcgggtgtctatccgaacccggtgccgcat
gctgatttcgtcaccaccaccacgcacaagagcctgcgcggcccgcgcggcggcgtgatc
ctgatgaaagccgagttcgaaaagcagatcaactcggcaattttcccgggcattcaaggc
ggtccgctgatgcacgtgatcgccggcaaggccgtcgcgttcaaggaagccctgtcgccg
gagttcaaggcgtaccagcagcaagtcgtcgagaacgcacgcgtgctggctgaaacgctg
gtcaagcgcggtctgcgcatcgtctcgggccgcaccgaaagccacgtgatgctggtcgac
ctgcgcgccaagaagatcaccggcaaggcagcggaagctgcgctcggcgcggcgcacatc
accgtcaacaagaacgcgattccgaacgacccggaaaagccgttcgtgacgagcggcgtg
cgtctgggctcgccggccatgaccacgcgtggctttggcgtcaaggaagcggaacaggtg
ggcaacctgatcgccgacgtgctggacaacccggaagacgcagccacgatcgagcgtgtg
cgggcgcaagtcgccgagctgacccagcgcttcccggtttaccgctaa
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