Paraburkholderia caffeinilytica: DSC91_006320
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Entry
DSC91_006320 CDS
T06448
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC91_006320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaf03019
]
DSC91_006320
Enzymes [BR:
pcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSC91_006320
Messenger RNA biogenesis [BR:
pcaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSC91_006320
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AXL53059
LinkDB
All DBs
Position
2:3157917..3159470
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AA seq
517 aa
AA seq
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MPSAVPTAAARTAPSAFLAKATMSDTAVTPSTATFDQFGLAPDILKAVKESGYTTPTPIQ
AQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRE
LADQVAANVQSYAKHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTAN
LGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQ
TIEVARSNSTATNVTQIVYEVAEGDKTGAVVKLIRDRSLKQVIVFCNSKIGASRLARSLE
RDGVVATAIHGDRTQNERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNA
EDYVHRIGRTGRAGASGDALSLCSPNERKQLAEIEKLIKRPLDVQHLTVDTPVRHHHEDR
PPRRERVDGRAEGRDERGGRRRSGASSSGSFDRPHHHRAQPVDDFFLKPYEPSAASVRKV
EEAAASSATAPQKPASKQPLAALLGGFGMPRKSPSST
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgccctctgcggttccgaccgctgccgcgcgcaccgcgccaagcgcatttttagcgaaa
gccaccatgtccgacacagccgtcacgcccagtactgcgacttttgatcaattcggtctc
gcacccgacatcctgaaagccgtcaaagaatcgggctacaccacccctacgccgatccag
gcgcaggcgattccggtcgtgctggccggccgcgacatgatgggcgccgcgcaaacgggc
accggcaagaccgcgagcttctcgctgccgatcatccagcgcctgctgccgcaagccagc
acgagcgcatcgcccgcccgccatccggtgcgcgcgctgatccttacgccgactcgcgaa
ctggccgaccaggtggcggcgaacgtgcagtcgtatgcgaagcacacggcgctgcgcagc
gccgtggtgttcggcggtgtcgacatgaatccgcagtccgagcagctgcgccgcggcgtc
gaaattctgatcgccacgccgggccgtctgctcgatcacgtgcagcagaagaccgccaat
ctcggccaggtgcagatcctcgtgctcgacgaagccgaccggatgctcgacatgggcttc
ctgccggatttgcagcgcatcctgaacctgctgccgaaggagcgtcagacgctgctgttt
tcggccacgttctcgggcgaaatcaagaagctggccgccacgtacctgcgcaacccgcag
acgatcgaagttgcgcgcagcaattcgacggcgaccaacgtgacgcagatcgtttatgaa
gttgccgagggcgacaagacgggtgcggtcgtcaaactgattcgcgatcgcagcctcaag
caggtgatcgtgttctgcaacagcaagattggtgcgagccgtctcgcgcggagtctcgag
cgcgacggcgtggtcgccacggcgattcacggcgaccggacgcagaatgaacggatgcag
gcgctggatgcattcaagcgaggcgaaatcgaggcgttggtggcgaccgacgttgctgcg
cgcggtctggatattgccgagctgcccgccgtgatcaacttcgatctgccgttcaatgcg
gaagattatgtgcaccggattggccgcaccgggcgtgccggcgcgtcgggcgacgcgttg
tcgctgtgcagcccgaacgagcgcaagcagcttgccgagatcgagaagctgatcaagcgg
cctctggatgtgcaacacctgactgtggatacgccggtgcggcaccatcatgaagatcgt
ccgccgcggcgtgagcgcgtggatggccgtgcagagggccgtgacgagcggggcggtcgc
cggcgttcgggggcttcttcgtcgggttcgttcgatcggccgcatcatcatcgcgcgcag
cctgtggatgattttttccttaagccttacgagccctcggcggcttctgtgaggaaggtt
gaggaggcggcggcctcgtcggccactgcgccgcagaagccggcttccaagcagccgttg
gctgcgctgctgggtgggttcgggatgcccaggaagtcgccgtcgtctacctga
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