Paraburkholderia caffeinilytica: DSC91_006323
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Entry
DSC91_006323 CDS
T06448
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03030
DNA replication
pcaf03430
Mismatch repair
pcaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSC91_006323
03430 Mismatch repair
DSC91_006323
03440 Homologous recombination
DSC91_006323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcaf03032
]
DSC91_006323
03400 DNA repair and recombination proteins [BR:
pcaf03400
]
DSC91_006323
Enzymes [BR:
pcaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DSC91_006323
DNA replication proteins [BR:
pcaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DSC91_006323
DNA repair and recombination proteins [BR:
pcaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DSC91_006323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
HROB
Motif
Other DBs
NCBI-ProteinID:
AXL53062
LinkDB
All DBs
Position
2:3161794..3165372
Genome browser
AA seq
1192 aa
AA seq
DB search
MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA
RGKGVKPIAGCDVWITNPDDREKSSRLLLLVKNRRGYLNLCELLSKASLTNQYRGRAEVE
AGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNALHWAKVFPGGFYIELQRCGQP
GGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTS
EQYFRTQEEMAGLFADLPAALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQL
SKEGLEKRLEQLYPDAAEREAQRETYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIAD
AMKEEPLLQERFDNEDEVHQMLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLAQVPLDDVA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAE
HRELFRQGASKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCLTNKMAVLPPDVNLSAYRFEPVAEPDGKRSKTIRYGLG
AIKGSGQNAIEEILRAREEGLFIDIFDFCNRVDRRIVNRRTVEALIRAGAFDTLHANRAQ
LIASVSLAMEAAEQASANAMQAGLFDMGDAPSQGHELVDEPEWPEKKKLQEEKAALGFYL
SGHLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDGTGQC
EVTVFNETFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKV
QMNGNADASALRRVLEAHSAGKDEPQAAPAPAASSRGGNGGGGGGRNGGGYGGGGQRQAV
QIPNGLAVQVVYRSENAQGEMRLGDAWRVKPTDELLAALRGEFAGSAIEIVY
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagatccccgcttcgttcatcttcgcgtccactccgaattctcgatt
gccgacggcatcgtgcgtcttgacgacgtcgtcaaggccgccgccaaagacggtcagggt
gcgctcgccctcaccgacctcggcaacgcgttcggcctcgtccgtttttacaaggaggct
cgcggcaaaggggtcaaacccattgccggctgcgacgtctggatcaccaatccggacgac
cgcgagaagtcttcccgtttgctgctgctggtcaagaaccggcgcggctatctgaatctg
tgcgagctgctcagcaaggcgtcgctcactaaccagtatcgcggccgtgcggaagtcgaa
gccggctggctcgaatccggtctgggtgaaggcctgctcgcgttgtcgggtgcgcaacag
ggcgacattggcctcgcgcttgccgccggtaacgaagaagcggccaaacgcaatgcattg
cattgggcaaaggtgtttcccggcggcttctatatcgagctgcaacggtgcggtcagccg
ggcggcgagcagtacgtgcagcaggcggttgcgctcgcggcgtcgctgaaattaccggtg
gtggccacccaccccatgcagttcatgacgcccgacgatttcaccgcgcacgaggcgcgc
gtgtgtatttccgaaggcgacatcctggcgaatccgcgtcgctcgaagcgctttacgtcc
gagcagtatttccgcacccaggaagaaatggcggggctgttcgcggaccttccggcggcg
ctcgccaacagtgtcgaaatcgccaagcgctgtaatctgacgctcgaactcggcaagccg
aagctgccgctcttcccgacgcccgacggcatgtccctcgacgactacctcgtgcaattg
tcgaaagagggtctcgaaaagcgtctcgaacaactgtacccggatgcggccgagcgcgag
gcgcagcgcgaaacgtattaccagcgcctcgaattcgagtgcggcacgatcatcaagatg
ggctttccgggctacttcctgatcgttgcggacttcattaactgggccaagaacaatggc
gtgccggtcggtcccggccggggttcgggtgcaggttcgctggtcgcgtatgcactcggc
gtgaccgaccttgatccgctgcgctacaacctgctgttcgaacggttcctgaatccggaa
cgggtctcgatgcccgacttcgacatcgacttctgccagcacggccgcgaccgtgtgatt
cagtacgtgaaggagaagtacggcgcggacgccgtgtcgcagatcgccaccttcggcacg
atggcggcgaaggccgcggtgcgcgatatcggccgcgtgctcgatctcggctatatgttc
acggacggcatcgccaagctgattccgttcaagccgggcaagcacgtcaccatcgccgac
gcgatgaaggaagagccgctgctgcaggagcgcttcgataacgaagacgaagtgcatcag
atgctcgaactcgcgcagcgcgtggaaggcctgacgcgtaacgtcggtatgcacgccggt
ggcgtgctgatcgcgcccggcaagctgaccgacttctgcccgctctatacgcagggcgac
gaaagcggtgtggtgagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaag
ttcgactttttgggcctcaccacgctgacgattctcgattgggccgagcgctacatccgc
cgtctcgatccgtcgaaaaaagattggtcgctcgcgcaggtgccgctcgacgacgtggcg
tcgttttcgatcctgaagaaagcgaatacggtcgccgtgttccagctggaaagccgcggc
atgcaaggcatgctgaaagacgcacagcctgaccgcttcgaggacatcatcgcgctggtg
gcgttgtaccgtccgggcccaatggatctgatcccgagcttctgtgcgcgtaagcacggc
cgcgaagtggtggagtatccggatccgcgcgtcgaacctgttctgaaagagacctacggc
atcatggtctatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctg
ggcggcgctgacttgctgcgtcgtgcgatgggtaagaagaaggccgaggaaatggccgag
caccgcgagctgtttcgccagggcgcctcgaaaaatgggctgaccggcgagaaagccgac
gaaatcttcgatttgatggagaagttcgcgggctacggcttcaacaaatcgcacgcggcg
gcgtacgcgctgcttgcgtattacaccgcatggctgaaggcgcaccatccggccgaattc
atggcggcgaatatgtcgctcgccatggacgatacggacaaggtcaagatcctgttcgag
gattgcctcacgaacaagatggccgtgttgccgccggacgtcaatctgtcggcgtaccgt
ttcgagccggtcgcggaaccggacggcaagcggtcgaaaacgatccgctatggtctcggc
gcaatcaagggcagcggccagaacgcgatcgaggaaatcctgcgcgcacgcgaagaaggt
ctgttcatcgacatcttcgacttctgcaaccgggtcgaccggcggatcgtcaatcgccgg
acggtggaggccttgatccgcgccggcgcgttcgacacgctgcatgcgaatcgcgcgcag
ttgatcgcctctgtctcgctggccatggaagccgccgagcaggcgagcgccaatgcgatg
caggcgggcctgttcgacatgggcgacgcgccctcccaaggtcacgagctggtcgacgag
ccggaatggccggaaaagaagaagctgcaggaagagaaggccgcgctcggtttctacctg
tcgggccatctgttcgatgcctacaaggatgaagtgcgccgtttcgtgcgccagaagatc
ggcgaactgaaggaagggcgcgacaagctggtcgccggtgtgatcgcgtcgctgcgtacg
cagatgactcagcgcggcaagatgttgatcgcgctgctcgacgacggcaccggccaatgc
gaagtgaccgtcttcaacgagaccttcgaagcgcacaaacagcttttcaaggaagacgag
ttgctggtggtgcagggccaggcgcgtaacgacgcattcaccggcggcatccgcttcacg
gtcgatacggtcatggacctcggccgcgcgcgctgtcgctatgcagaagccgtgaaggtg
cagatgaacggcaatgcggatgcgtcggcgttgcggcgcgtactcgaggcgcatagcgcg
gggaaggacgagccgcaagctgcgccggcgccggcggcgtcatcgcgtggcggcaatgga
ggcggtggtggtggccgcaacggcggcggttatggcggtggtggccagcgtcaggccgtg
cagattccgaatggcctcgcggtgcaggtggtctatcgcagcgaaaatgcgcaaggcgaa
atgcgtctgggcgacgcgtggcgcgtgaagccgactgacgaactactcgcggcattgcgc
ggcgagtttgccggaagcgcgatcgaaatcgtttattga
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