Paraburkholderia caffeinilytica: DSC91_006405
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Entry
DSC91_006405 CDS
T06448
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC91_006405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaf03019
]
DSC91_006405
03016 Transfer RNA biogenesis [BR:
pcaf03016
]
DSC91_006405
Enzymes [BR:
pcaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DSC91_006405
Messenger RNA biogenesis [BR:
pcaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DSC91_006405
Transfer RNA biogenesis [BR:
pcaf03016
]
Prokaryotic type
tRNA degradation factors
DSC91_006405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
KH_PNO1_2nd
S1_2
Motif
Other DBs
NCBI-ProteinID:
AXL53123
LinkDB
All DBs
Position
2:3243862..3246006
Genome browser
AA seq
714 aa
AA seq
DB search
MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT
VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL
NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA
GTERAVLMVESEAQQLTEEVMLGAVVFGHDQMQIAINAIHDLVSEGGKPEWDWQPAAKNE
PLIARVTDLAQADLLAAYQIRDKQARSAKLKEVYAATSAKLEEEAAAAGTVAADKASVGN
VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT
LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL
PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF
AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG
KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV
TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA
NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNEGANGGAPQGEPTPQ
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataagatcgtcaaggaatttcagtgggggcaacataaggttcgcctcgaaacg
ggcgaaatcgcccgtcaggcgagcggtgcggtgatcgtcgatgtcgaagacaccgttgtg
ctggccaccgtggtcggcgccaagaccgccaagccgggccaggacttcttcccgctgacc
gtcgattacctcgaaaagacctacgctgcaggcaagattcccggtggtttcttccgccgt
gaaggccgcccgtcggaaggcgaaacgctgatttcgcgcctcatcgaccgtccgctgcgt
ccgctgttcccggaaggcttctacaacgaagtccaggtcgtgatccacgtcctgtcgttg
aaccccgaaatccccgctgacatccccgcgctgatcggcgcgtcggcggcgctcgccgtg
tccggtctgccgttcaacggcccggtcggcgcagcacgcgtggcctatatcaacaacgaa
tacgtgttgaacccgacgcgtccgcaaatgaaggaatcggcgctcgacctgatcgtcgcc
ggtacggaacgcgcggtgctgatggtggaatcggaagcgcagcaactgaccgaagaagtg
atgctcggcgccgtggtgttcggccacgaccagatgcagatcgcgatcaatgcgatccac
gatctggtcagcgaaggtggcaagccggaatgggattggcagccggcagcgaagaacgag
ccgctgatcgcacgcgtgacggacctggctcaagccgatctgctcgccgcttatcagatc
cgcgacaagcaggctcgctcggccaagctgaaggaagtctacgcagcaacgtcggccaag
ctggaagaagaagcagcggcagccggcacggttgcggcggacaaggctagcgtcggcaac
gtgctgttcgacatcgaagcgaagatcgtccgtacgcagatcctgaacggcgagccgcgt
atcgacggccgcgacacgcgcacggtgcgcccgatcgaaatccgtaccggcgtgctgccg
cgtacgcacggttcggcactgttcacgcgtggcgaaacgcaggccctggtggtcgcaacg
ctgggcacgaagggcgacgagcagaacatcgacgcgctcgaaggcgagtaccgcgaacgc
ttcatgctccactacaacatgcctccgttcgcgaccggcgaaacgggccgcgtcggttcg
ccgaagcgccgtgaaatcggtcacggccgtctggccaagcgcgcgctggctgcatgcctg
ccgagcgccgacgaattcggctactcgattcgcgtcgtgtcggaaatcaccgaatcgaac
ggttcgtcgtcgatggcttcggtgtgcggcggctgcctcgcactgatggacgccggcgtg
ccgatgaaggcgcacgtcgccggcatcgccatgggcctgattctcgaaggcaacaagttt
gccgtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttcaaggtg
gcgggcaccgagcaaggcgtgaccgcgctgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaggtcgccctcgcgcaagcgaaggaaggccgtatgcacatcctcggc
aagatgacctcggctgtgtcgggcgcgaacacggtgctgtcggactacgcaccgcgcatg
atcacgatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggtggttcggtg
atccgcgcgctgaccgaagaaaccggcacgacgatcgatatttcggacgacggcgtcgtc
accatcgccagcacgagcagcgaagggatggccgaagcgaagaagcgtatcgagaacatc
acgctggaagtcgaagtgggccaggtgtacgaaggcacggtgctcaagctgctcgatttc
ggcgcgatcgtgaacatcctgccgggcaaggacggcctgctgcacatctccgaaatcgcc
aacgagcgtatcaaggacatcaacgactatctcaaagatggtcagcaggtgaaggtcaag
gtcatccagacggacgagaagggccgcgtgcgtttgtcggccaaggcgttgctgaatgaa
ggtgcaaacggcggcgcgccgcaaggcgaaccgacgccgcagtaa
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