Paraburkholderia caffeinilytica: DSC91_006752
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Entry
DSC91_006752 CDS
T06448
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DSC91_006752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcaf03400
]
DSC91_006752
Enzymes [BR:
pcaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DSC91_006752
DNA repair and recombination proteins [BR:
pcaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DSC91_006752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
SH3_13
UvrD-helicase
Viral_helicase1
Helicase_RecD
RecD_N
SLFN-g3_helicase
AAA_22
AAA_25
DEAD
T2SSE
CbiA
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AXL53367
LinkDB
All DBs
Position
2:3625803..3627986
Genome browser
AA seq
727 aa
AA seq
DB search
MSTFERISSLPPELDDIGVNLPAPADFSTALAEGFARRIGMLARRGGAPGEAVKWAARAA
FAASRATAEGHVCLPLAVLARRFDASSAEVRAALFASGMASDGSPSAAALRPLVVDGQGR
LYLARYYDYERRLARSLVAHAGGGQVEGVRAREHARAAADVDARASASSGASGTPDTQTA
AGESGNANTRVASRAGQNAGAGADAGANADATAQTLHERLLRYFGPPQDDEVDWQRVAAV
MALSGRLTIVSGGPGTGKTTTVVGVLACLLDARADLLIALAAPTGKAAQRMQEALLARAG
DLPPELAARLPQTSYTLHRLLGSGPGGRFRHHRDNPLPYDVVVIDEASMIDVAMAARLLD
AIAPQTRLVMLGDKDQLAAVEAGAVFAELSARPAFTQNGLQGIAEALGIDAARLSQALPG
VSSGFDEGPDDLFADTGSSDDSDTPPFPSPAQNPLADCVVWLERNYRFGLESPIGRLSLA
IRNGAAGAALDVLRIDPAEPCAAALYEDAHATLADRTVARLAAGFAAYADALAEALAADT
PDPLPLFDALNRFRILCATRAGPRGVDQVNAAMAAQVRRSAGVTLAVGAQWFAGRPVMVT
RNDYALGLFNGDIGIALPGAGGALRVYFRSGDGGLRAVSPAALPPHDTAFALTVHKSQGS
EFQHAVLMLPSVFSRVLSRELVYTAITRARERVDVIGARAVLAQAIATPTQRDSGLAARI
AEVWRLV
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgttcgagcggatctcttccttgccgccggagctcgacgatatcggggtgaat
ttacccgcgccggccgatttcagcaccgcgcttgccgaaggattcgcgcgccgcatcggc
atgctggcgcggcgtggcggcgcgccgggcgaggcggtgaagtgggcggcgcgggctgcc
ttcgccgcgagccgcgcgaccgccgaagggcacgtgtgcctgccgcttgccgtactggcg
cgacgcttcgatgcgtcgagcgcggaagtgcgggcggcgctgttcgcaagcggcatggcc
agcgacgggtcgccgagcgcggcggcgttgcggccgctggtggtcgacgggcaagggcga
ctttatctggcgcgctactacgactacgaacggcgtctcgcacgctcgctggttgcgcac
gcaggcggggggcaggtggaaggtgtgagggctcgtgagcatgcgcgggctgcggcggat
gtcgacgctcgtgcgagtgcgagttccggcgcaagtggcacgccagatacacagacagct
gccggtgaaagtggcaacgccaacacccgtgtggcttcacgcgcgggtcaaaatgcaggt
gccggcgcagatgcaggcgcaaacgcggacgcgactgcccaaacgctgcacgagcgtctg
ttgcgctacttcggcccgccgcaggacgacgaggtcgactggcaacgtgtcgcggcggtc
atggcgctgtctggccgcctgaccatcgtcagcggcggcccgggtaccggcaagacgact
acggtggtcggtgtgcttgcctgtttgctggacgcgcgggccgatctgctaattgcactg
gcggcgcctaccggcaaagccgcgcagcgcatgcaggaggccttgctcgcccgtgccggc
gatctgccgccggagctcgccgcgcgcctgccgcagacgtcttacaccttgcaccggctg
ctcgggtccgggccgggcgggcgcttccggcatcatcgcgacaatccgctgccttatgac
gtcgtcgtgatcgacgaggcgtcgatgatcgacgtggcgatggcagcgcgtctgctcgat
gccatcgcaccgcagacgcgtctggtgatgctgggtgacaaggatcagctcgcggccgtc
gaggcgggtgcggtgttcgccgaactcagcgcgcgacctgctttcacgcagaatggactg
caggggatcgccgaggcgcttggcattgacgcggcgcggttgtcgcaagcattgcccggc
gtgtcgagcggcttcgacgaaggccccgacgatcttttcgcagatacgggttcgtcggac
gattcggatacgccgcctttcccttcgccggctcaaaacccgctcgcggactgcgtcgtc
tggctcgagcgtaactatcgattcggtctcgaatcgcccatcgggcgtttgtcgctcgcg
attcgcaacggcgcggccggcgcggcgctcgacgtcctgcgcatcgatcccgccgaaccg
tgcgcggcggcgctgtacgaagatgcgcatgcgacgcttgccgatcgcaccgtcgcgcgg
cttgccgcaggttttgcagcgtatgctgatgcgcttgccgaagcgctggccgccgatacg
ccggacccgctccctctcttcgacgcactgaaccgttttcgaattctgtgcgcgacccgt
gcggggccgcgcggcgtcgatcaggtgaatgccgcgatggccgcgcaggtgcggcgttcg
gcgggtgtgacgctggccgtcggtgcgcagtggttcgccgggcgccccgtcatggtcacg
cgcaacgattacgcgctcggtctgttcaacggcgacatcggcattgcgctgccgggggcg
ggcggtgcgttgcgtgtgtatttccgtagcggcgacggcggtctgcgtgccgtatcgccc
gcggcactgccgccgcacgacacggcattcgcgctcacggttcataagtcgcaaggctcg
gagttccagcatgcggtgctgatgttgccgtcggtgttcagccgggtgttgtcgcgcgag
ctcgtgtacacggcaattacccgtgcgcgcgagcgagtggacgtgattggcgcacgcgcg
gtgctggcgcaggccatcgccacgccgacacagcgtgactcgggcctggccgcgcgaatc
gcggaggtgtggcgcctcgtctag
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