Porphyromonas cangingivalis: NCTC12856_00275
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Entry
NCTC12856_00275 CDS
T06514
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcag
Porphyromonas cangingivalis
Pathway
pcag03030
DNA replication
pcag03430
Mismatch repair
pcag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12856_00275 (dnaE)
03430 Mismatch repair
NCTC12856_00275 (dnaE)
03440 Homologous recombination
NCTC12856_00275 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcag03032
]
NCTC12856_00275 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcag03400
]
NCTC12856_00275 (dnaE)
Enzymes [BR:
pcag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12856_00275 (dnaE)
DNA replication proteins [BR:
pcag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC12856_00275 (dnaE)
DNA repair and recombination proteins [BR:
pcag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC12856_00275 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
T2SSK
DUF6282
Motif
Other DBs
NCBI-ProteinID:
VEJ02224
LinkDB
All DBs
Position
1:316721..320365
Genome browser
AA seq
1214 aa
AA seq
DB search
MSDSTSIRPFVHLHVHSYFSILDGQASVKELVDLAKADGMRGIALTDHGSMFGIKEFVNY
VNKINGGPKAKIKEIETALAEAPEDGKSKLLEELEKAKKEIFTPIIGCECYCARRGRHMK
ETEKLDRSGYHLIVIAKNLVGYKNLIKMVSKSYTEGLYYRPRIDKELLEEHHEGLIISSA
CLGGEIPQLIMKGDYEGAKQSVLWFKSIFGDDYYLELQRHKATVPRANHSTYEEQMKVNE
QLIKLARETGVKVIATNDVHFAKEEDAETHDRLICMNTKVFYDDPNRLFYSKQEWLKSQA
DMSRIFADIPEALDNTIEILDKIEHYSIDNKPLMPDFPIPEGFDGEDDYLRHLSYEGAKR
RYGGELSPVVVERLDFELETIKKMGFPGYFLIVQDFIAAAREMGVSVGPGRGSAAGSLVA
YALGITNLDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRLEVINWVSKKYGYEKVAHII
TYGTMASKSAIKDVARVVRLPLPDSNKLAKLIPDKLPDVKKVNIEAAIKYVPELNDIYNG
SDKVKRETLDYAMRLEGTVRSTGVHACGIIIGKDDISDTVPIFVTRDSLTNEEILVTQYE
GKVIEQTGLIKMDFLGLKTLSIIKEALLNIKKRHGLSIDIEAIPLDDQKTYDLFCEGRTS
AVFQFESAGMQKYLMQLKPSKFEDLIAMNALYRPGPMDYIPSFINRKHGEEPIHYDLPEM
ERFLKDTYGITVFQEQVMLLSRELAGFTRGQSDTLRKAMGKKDLPTMASLQSKFLAGGKE
KGHPEDVLNKIWADWTKFAEYAFNKSHSTCYSWVAYQTAYLKANYPAEFMAGVLSRNVNN
STEVIKYIDECRGMGIEVLCPDVNESDAIFTVNAKGDIRFGLSAIKGISRSAVQNIVQER
EQNGQYKDVYDFFERVNPNQCTKKVVESLVLCGAFDSFGDFSREDFFATEEHRDETFLDK
LLKFALKTQNEKNSAQVSLFGESEYQEMAKPVLEKRAHPWSDIERLTKEKELLGIYLTSS
PLDKYALVLQYYCNANVDCLSDPAEFVGRDMIFGGIVTGYREAVTRKGAQCGFIKLQDLT
GEGELALFGQNYAKFANYGKEGLYVLFTAAVESKDNRHFISIQKCQLLEEVYDTLLKNLS
IDIPYYAMTDELYSQLVPDLLKTQNGHIDVTISVLDPSSGVVLKLESDKLKGRSLSSAFV
EKLEKIEDIKFRLN
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactctacatcaatacgaccctttgtacaccttcatgtacactcttacttttcg
attttggacggacaagcatctgtaaaggagcttgtagatctcgccaaggcggatggtatg
cgtggtattgctcttactgaccatggtagcatgtttggtatcaaggagttcgtcaactat
gtcaataagatcaacggtggccctaaggcaaaaatcaaggaaatagagactgctttggca
gaggcacccgaggatgggaagtcgaaactcttggaggagcttgaaaaggcaaagaaagag
atatttacgcctatcatcgggtgcgaatgttattgtgctcgtcgtggtcgtcacatgaag
gagacagagaagcttgacagaagtggctatcacctcatcgtcattgcaaaaaatcttgtg
ggctacaagaatctcatcaagatggtttctaagtcctataccgagggactgtactataga
cctcgtatcgacaaagagcttctcgaagaacatcatgaaggcctcatcatcagtagtgcg
tgtctcgggggtgagattccgcagttgatcatgaaaggggactatgagggtgcaaagcag
tcggtattgtggttcaagtctatctttggtgatgattattatcttgagttgcagagacac
aaggctaccgtccctcgtgccaaccatagcacgtacgaagagcagatgaaagtcaacgaa
cagttgatcaagttggctcgagagacgggggttaaggttatcgccactaatgacgttcac
ttcgccaaggaagaggatgcagagacgcatgaccgcttgatatgtatgaatacgaaggtc
ttctacgatgatccgaacaggctcttctactccaagcaggagtggcttaagagtcaggcg
gatatgagcagaatatttgcggatatccccgaagctctcgacaacacaatagagatactt
gataagatagagcactattcgatagacaataagcctctcatgcctgacttccctatacca
gagggatttgatggagaggatgattacctcaggcatttatcgtacgaaggggcaaagaga
cggtatggtggagagctttctcccgtcgttgtcgaacgccttgacttcgagcttgaaacc
atcaagaaaatggggtttcccgggtactttctcatcgtccaggacttcattgccgctgcg
cgagagatgggggtgtcggtaggccccggtcgtggatcagctgctgggtcacttgtagct
tatgctttgggtattaccaatctggatcctatcaagtacgatttgctgtttgagaggttt
cttaatcctgaccgtatctctctccctgatatcgatatcgacttcgacgacgatggacgt
ctggaggttatcaactgggtctcgaagaagtacggttacgaaaaagtcgctcatatcatc
acttatggtacgatggcatccaagagtgctatcaaggacgttgccagagtcgtccgtcta
cccttgccggacagtaataaattagcgaaactcattcctgataaattgcctgacgtcaag
aaggtgaacatcgaggcagcgataaagtatgtacccgaacttaatgatatatacaacgga
tcagataaggtcaagcgtgagaccctcgactatgccatgaggctggagggaacagtccgt
agtaccggtgtccacgcttgtggtatcatcatcggtaaggatgacatctctgatactgta
cctatatttgtgacacgagacagtttgaccaacgaagagatccttgtgacacaatatgag
ggtaaggtcatcgagcaaacgggattgatcaagatggacttcttgggtcttaagacactt
tcgatcatcaaggaagccctcctcaatatcaagaagagacatggtctgagtatagatata
gaggcaatcccgctggatgatcagaagacctacgatctcttctgcgaagggcgtacttcg
gcagtcttccagttcgaatctgccggtatgcagaagtatctcatgcagttgaagccttca
aagttcgaagaccttattgcgatgaatgctctctatcgtccggggccgatggattatatc
ccatcctttatcaatcgtaagcacggagaagagcccatacactatgatctcccggagatg
gaacgcttcttgaaggatacctatggtatcacagtctttcaagagcaggtgatgctcctg
tcgcgtgagctggcaggttttaccagaggtcagtccgatacccttcgtaaggcaatgggt
aaaaaggacttgcccaccatggcatcacttcagagtaagttcctcgccggtggtaaggag
aaggggcatccggaggatgtactcaacaagatttgggctgactggacgaagtttgcggag
tacgccttcaacaagagccactctacttgttactcatgggtcgcctatcagacagcttat
ttgaaggccaactaccctgcagagtttatggcaggggtgttgagccgaaatgtcaacaac
agtacggaagttatcaagtacatcgacgagtgtcgtggtatggggatcgaggtgctttgc
cctgatgtcaacgagtctgatgctatcttcacagtcaatgccaagggagatattcgtttc
gggttgagtgccatcaaagggatctcaagaagtgctgtccaaaacattgttcaagagcga
gagcagaacggtcagtacaaggatgtctatgacttctttgaacgggtcaatcctaatcag
tgtaccaagaaagtcgtcgagtctctcgtgctctgtggggcattcgacagttttggagat
ttctcaagagaagacttttttgctaccgaggagcatagggatgagacattcttggataaa
ttgttgaagtttgccctcaagactcaaaatgagaagaactctgcacaggtttccctgttc
ggagagagcgagtaccaagagatggccaagcctgtactcgaaaaacgtgctcatccttgg
agcgatatcgaacgcctgactaaggagaaagagctattggggatctatttgacctcttct
ccacttgacaaatatgcacttgtgttgcagtattattgcaatgccaatgtcgattgcttg
tccgatcctgcagagtttgtggggcgtgatatgatttttggtggtatcgttaccggatat
agagaagccgttactcgtaaaggtgcacagtgtggtttcatcaaactccaagacctcaca
ggagagggggaattagcgctattcggacagaattatgcaaagtttgccaactacggtaag
gagggactttatgtcttgttcaccgccgctgtcgaaagtaaggataatagacacttcatt
tcgatccaaaaatgtcagttgttggaagaggtgtatgacacactactgaaaaatctaagc
atcgacattccctactatgcaatgacagacgaactctacagtcagcttgtgcccgatctg
ctcaagactcagaatggtcatatcgatgttactattagcgttttagatccctccagtggc
gttgtccttaagttggagtccgataaattgaaggggcgcagtctctcttcagcctttgta
gagaagctcgaaaagatcgaagacatcaagttccgcctgaactaa
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integrated database retrieval system
