Porphyromonas cangingivalis: NCTC12856_00698
Help
Entry
NCTC12856_00698 CDS
T06514
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase dbpA
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcag
Porphyromonas cangingivalis
Pathway
pcag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12856_00698 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcag03019
]
NCTC12856_00698 (dbpA)
Enzymes [BR:
pcag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12856_00698 (dbpA)
Messenger RNA biogenesis [BR:
pcag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12856_00698 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
NACHT
SNF2-rel_dom
UvrD-helicase
MavL-like
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
VEJ02970
LinkDB
All DBs
Position
1:792232..793572
Genome browser
AA seq
446 aa
AA seq
DB search
MTFYDFDLDDRVLDGLDAMNFVKPSPIQEASIPPILDGHDVIACAQTGTGKTAAFVLPIL
SLLSSGEYSQDHVNVVIMAPTRELAQQIDQQIEAFSYFVNVSAVPIYGGTGGAEWEQQKR
GLRLGADIVVATPGRLISHLNLNTVNLSEVSFFVLDEADRMLDMGFYDDIIEIYKHLPES
VQTIMFSATMPANIRKMAKEIMRNPVEVNIAVSRPPESINQSVFYCHDEDKSALLIDLFT
RLRPKRCITFFASKDRVKQMKRELSMRGFKAMDMHSDLDQSVREEVMRDFKAGKIETIVA
TDIISRGIDVEDIELVVNFDVPHDPEDYVHRIGRTARGTNLKGAAITIVSSKDKRRFLEI
EKFLGYKVKINELPEGIRPPDNSAPSNNQKRSNNRRKPYKKKPAETGAKTTSAPNKDKEN
KPRRRPNRRNKNRNNNPNKPKDKTNV
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgactttctacgattttgacttagacgacagggtattggatgggcttgacgccatgaat
tttgtcaagccttcgccgatacaggaagcaagtattccccctatccttgatggacacgac
gttattgcatgtgcacagaccggtacaggcaagactgctgcatttgtcctaccgatactc
agcctcctctcgtcaggcgaatacagtcaggatcatgtcaacgtggtcatcatggctcct
acaagagagttggcccaacagatagaccagcaaatcgaagccttctcttactttgtgaat
gtctcagctgtccctatctatggaggtacaggaggtgcagagtgggagcaacaaaaaaga
ggtctacgcctcggtgccgatattgtcgtcgccactcccggtcgtctcatttcgcacctc
aaccttaacacggtaaatctatcggaggtgagtttctttgtcttggacgaagccgatagg
atgctcgacatgggattttatgacgacatcatagagatctacaagcaccttccggagtct
gtgcagaccatcatgttctctgccaccatgccggcaaatatccgcaagatggcaaaagag
atcatgcgtaatcctgtagaagtgaatatagcagtgtcaaggcctcctgaaagtatcaat
caaagtgtattttactgtcatgatgaagacaagtctgcactgttgatcgaccttttcaca
aggctacgtccgaagcgttgcatcacattttttgcatccaaggacagggtcaagcagatg
aaacgcgagttgtctatgcgaggatttaaggccatggatatgcactctgatcttgaccaa
agtgtaagagaagaggtgatgagagacttcaaggccggaaagattgaaacaatagttgcg
acggacattatctctcgtggtatcgatgtggaggacattgagctggttgtgaacttcgat
gtcccacatgaccccgaagactacgtacaccgcatcgggcgtactgcacgtgggacgaac
ctcaaaggcgctgcgatcaccatcgtctcatccaaggacaagcgtagatttttggagatc
gaaaagtttttgggttacaaggtaaagatcaatgagctacctgaaggtataaggcctccg
gacaatagcgctcccagcaacaaccaaaagcgaagcaataatcgtagaaagccctacaaa
aagaaaccggcagagaccggagcgaaaaccacctctgctcccaacaaagacaaggagaat
aaacctcgtcgcagaccaaacagaagaaataaaaatagaaacaacaatcctaataagcca
aaggataaaaccaacgtatga
DBGET
integrated database retrieval system
