Porphyromonas cangingivalis: NCTC12856_00734
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Entry
NCTC12856_00734 CDS
T06514
Symbol
rlmCD
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcag
Porphyromonas cangingivalis
Brite
KEGG Orthology (KO) [BR:
pcag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcag03009
]
NCTC12856_00734 (rlmCD)
Enzymes [BR:
pcag01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NCTC12856_00734 (rlmCD)
Ribosome biogenesis [BR:
pcag03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NCTC12856_00734 (rlmCD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Methyltransf_25
TRM5-TYW2_MTfase
Cons_hypoth95
PabTrmU54_TRAM_dom
N6_N4_Mtase
UPF0020
PCMT
PrmA
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
VEJ03032
LinkDB
All DBs
Position
1:complement(838662..840086)
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AA seq
474 aa
AA seq
DB search
MARNKKAPVTVENLHIESIAAEGKCIAHLPDERVVFVPFVAPGDKVDIQLTKRRKAYAEG
RLLRLVEPSPQRIPAPCPHFTVCGGCKWQHIPYDLQLAAKDKQVNDQLQRIGKVSVKETR
PILGSEKIYRYRNKLEYTFSNRRWLTAEEIGTVEDIHEREGLGFHIPGMFDKVLDIKTCL
LQDDISDKIRLFVKDYCHSHEGYPFFDLREQTGFMRTLMIRNTTVGGLMVVVVFATEDEQ
KRVSLLTALREAFPEITSLMYVINEKRNDTFGDLDVHLFSGADHIWEEMEGLRFKIGPKS
FYQTNSEQAYRLYSYVRELAGLTGQELVYDLYTGTGTIASFVSRQARQVVGIEYVPEAIQ
DAHINAEVNGITNTLFYSGDMKDILTDDFVRRHGRPDVIITDPPRAGMHDDVVDVILRAA
PKRIVYVSCNPASQARDVAKMLDAYEVEISQPVDMFPHTHHVENILLLTRKEGV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggaacaaaaaagctccagtaacagtagaaaatctccacattgaatccatagcc
gctgagggtaagtgtattgctcatctgccggatgagagggtggtctttgtaccctttgtg
gctcccggagataaggttgatatccaactgacaaagcgtcgtaaggcttatgccgagggg
cgacttttgaggcttgtcgagccatcaccccaacgcatccctgctccttgtccacacttc
actgtctgtggcggatgtaagtggcaacacatcccctatgatctccagcttgccgccaag
gacaagcaggtcaatgatcagcttcagcgtatcggtaaagtgagtgtcaaggagacgaga
cccatcctcggatccgaaaagatttatcgctaccgtaataaattggagtacactttctcc
aaccgcagatggctcactgccgaagagatcggtacggtcgaagatatacatgagcgtgag
ggactcggctttcatatccccggtatgtttgacaaggttttggacatcaagacatgtctc
ttgcaggatgatatctcggataagattcgcctctttgtcaaagattactgtcacagtcat
gagggataccctttcttcgacctgcgtgagcagaccggttttatgaggacactcatgata
cgcaataccacggttggagggctgatggttgttgtcgtctttgcgacagaagacgagcag
aagcgggtgtctcttctcacagccctcagagaagctttccctgagattacatcactcatg
tatgtcatcaatgagaagcgtaatgacaccttcggagacttggatgtacatctcttcagt
ggcgcagatcacatctgggaggagatggaaggcttgcgcttcaagatcggccccaaatct
ttttatcagaccaacagcgaacaagcttatcgcctttattcttatgtccgagagttggcc
gggcttaccggtcaggagctcgtgtatgatctttatacgggtacagggactattgccagc
tttgtctctcgtcaggcccgacaagttgtcggtatagagtatgtccctgaagctattcag
gatgcgcacatcaatgccgaagtcaatggcatcacgaacactctcttctattccggggat
atgaaggacatccttaccgacgactttgtccgtcgacacggtcgtccggatgtcatcatc
acggatccaccacgtgccggtatgcatgatgatgttgttgacgtaatcctccgtgcagca
cctaagcgtatcgtatacgttagctgcaatcctgccagccaagcccgagatgttgccaag
atgcttgatgcttatgaggttgagatatcacagcccgttgatatgtttcctcatacccat
cacgtggagaacatccttctcttgacacggaaagaaggcgtatag
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