Porphyromonas cangingivalis: NCTC12856_01480
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Entry
NCTC12856_01480 CDS
T06514
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pcag
Porphyromonas cangingivalis
Pathway
pcag03030
DNA replication
pcag03410
Base excision repair
pcag03420
Nucleotide excision repair
pcag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12856_01480 (polA)
03410 Base excision repair
NCTC12856_01480 (polA)
03420 Nucleotide excision repair
NCTC12856_01480 (polA)
03440 Homologous recombination
NCTC12856_01480 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcag03032
]
NCTC12856_01480 (polA)
03400 DNA repair and recombination proteins [BR:
pcag03400
]
NCTC12856_01480 (polA)
Enzymes [BR:
pcag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12856_01480 (polA)
DNA replication proteins [BR:
pcag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12856_01480 (polA)
DNA repair and recombination proteins [BR:
pcag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NCTC12856_01480 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12856_01480 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
VEJ04120
LinkDB
All DBs
Position
1:1685440..1688253
Genome browser
AA seq
937 aa
AA seq
DB search
MKKKLYLLDAYALIYRGYFAFIRNPRINSQGKDTSAVFGFLLTFDEIRKKAKDDYLAVVF
DPKGPTFRHETYPEYKAQREETPDSIRFGVPYIKEIIKGMGVQIYEVPRYEADDVIGTIA
KRVGESGEAEVLMVTPDKDYGQLVSDNVFIYKPLKGAEFERIGPAEVVEKYGIRNHGQVI
DLLALMGDASDNVPGAPGVGEKTAAKLLSQYDDVDDIYAHVSEIKGKLGERLAEHEALVR
LSRELVTIVTDAPVDFALEDCKIREIDLPAITRIYEELEIKTLLKKVTEEATSTPAPSPT
EVQQASLFGDLFAPKAETPAEEDTASDSLSSYRTISDEKPEYHTVTTLKGVEDLALRLMQ
SDVFAFDTETDGLDALTAGIVGASFACKEGEAWYIPLPEDKAEATALLAPLVPLFARKDI
LKVGQNIKFDLEVLMRYGITPCAPYFDTMIAHYLLNPELSHGMDYMSENYLGYRPIPITD
LIGPKGKKQLSMRDVPVEKVAPYAAEDADVTLRLYHFLRPQIEERSLGSLFYDLEMPLME
VLMAMEQEGVALNTAELRTVATDMEARLSVLEKDIYESAGVEFNINSPKVVGEVLFDRLG
LGSKHKKTKTGNYATGEEILQKLKSEHPVVEMILRYRGLRKLLSTYVEALPELINPATGR
IHTTYNQTVAATGRLSSTNPNLQNIPIRDDDGREIRKAFTAHDPQTDVFVSADYSQIELR
LMAHLCGDEALVEAFRTGQDIHAATAAKIFGVALDEVTSEMRRRAKTANFGIIYGISSFG
LSERLSIPRKEASELIDGYFASYPKVKAYMDKVIAEAREKGYVETILGRRRYLKDIHAGN
AVVRGYAERNAVNAPIQGSAADIIKLAMVRISERLEKEALGAKMILQVHDELNFSCPKAE
LDRLSVIIREEMEGVCPSLSVPLTVDIGSGDNWLQAH
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagaaactatatctcctcgatgcttatgccctgatatacagaggctatttcgca
ttcatccgcaaccctcgcatcaacagtcagggcaaggacacttcggccgtcttcggcttc
ctcctcaccttcgacgagatccgcaagaaggccaaggacgactaccttgccgtggtcttt
gaccccaagggacctaccttccgccacgagacctaccccgagtacaaggctcagcgtgag
gagacacccgactcgatacgtttcggtgttccttacatcaaagagatcatcaaggggatg
ggggtacagatctacgaagtccctcgctacgaggcggatgacgtcatcggcacgatagcc
aagagagtaggagagagcggagaggcagaggtactcatggtcactcccgataaggactat
ggccaactcgtgtcggacaatgtcttcatctacaaacccctcaaaggggcagagttcgag
cgcataggccctgccgaagtggtggagaagtacggcatccgcaaccacggtcaggtcatc
gacctcctcgccctcatgggcgatgcttcggacaatgtccccggtgcaccgggggtgggc
gaaaagacagcagccaaactcttgtctcaatacgacgatgtggacgacatctatgcccac
gtgtcggagatcaagggcaaactgggtgagcgtcttgcggagcatgaggcacttgtgaga
ctttcgcgcgaactcgtcaccatcgtcaccgatgcgcctgtggacttcgcccttgaggac
tgtaagatccgtgagatagacctccctgcgatcactcgcatatatgaagagctggagatc
aagacccttctcaaaaaggtcacggaggaggcgacatctacacctgccccttcccccacg
gaggtgcagcaggcttcgctcttcggggatctctttgcacccaaggcagagacgcctgcc
gaggaggacacggcttcggatagcctttcgagctaccgtaccatctcggacgagaagccc
gaataccataccgtcaccacgttgaagggagtcgaagaccttgccctcagactcatgcag
agcgatgtctttgcattcgacacggagacggacggactcgatgcccttaccgcagggatc
gtgggggcttcgtttgcctgcaaggagggcgaagcgtggtacatcccccttcccgaggac
aaggcagaggccacggctctcctcgctccccttgtacctctttttgctcgcaaggacatc
ctcaaggtggggcaaaacatcaagtttgacctcgaagtactcatgcgttacggcatcaca
ccttgcgctccctacttcgacacgatgatcgctcactacctcctcaatcccgaactttcg
cacggcatggactatatgtcagagaattatctcggctatcgacccataccgatcaccgac
cttataggccctaagggtaagaagcaactcagcatgcgtgatgtgccggtcgaaaaggtc
gctccctatgcggccgaagatgcggatgtcacgctccgtctgtaccacttcctccgtcca
cagatcgaagaacgttcgttggggagtcttttctacgacttggagatgccactcatggag
gtccttatggcgatggagcaggaaggagtcgccctcaataccgctgagctacgcaccgtg
gcgacggatatggaggctcgactgtcggtactcgaaaaggacatatatgagagcgcaggg
gtagagttcaatatcaattcgcccaaggtcgtgggagaggtcctcttcgaccgcttggga
ctgggtagcaagcacaaaaagacaaagacaggcaactatgccaccggtgaggagatcctc
cagaagctcaagagcgagcaccccgtggtggagatgatcctgcgttatcgtggtctgcgc
aaactcctatcgacctatgtagaggcattgcccgagctcatcaaccctgccacaggacgc
atccacacgacttacaatcagaccgtggctgccacagggcgtctctccagcaccaacccc
aacctccagaacatccccatccgagacgatgatgggcgtgagatccgtaaggctttcacc
gcccatgatccacagacggatgtattcgtgtctgcggactactcacagatcgaactccgt
ctcatggcgcacctctgtggcgatgaagcacttgtcgaagcgttccgtacggggcaggac
atccatgctgccacggccgcaaagatcttcggtgtagcactcgatgaggtgacttcggag
atgagacgtcgtgccaaaacggcaaatttcgggatcatttacggtatctcatcgttcggc
ttgagcgaacgcctgagcatcccacgtaaggaggcatccgaactcatagacggctacttt
gcctcttatcctaaggtcaaggcctatatggacaaggtcatcgccgaagctcgtgaaaag
ggctacgtcgagaccatccttggtcgtcgtcgttacctcaaggacatccacgcaggtaac
gctgtcgtgaggggttatgccgagcgcaatgctgtcaatgcaccgatccaaggctctgca
gcagacatcatcaaactcgctatggtacgcatctcagagcgtctcgaaaaagaagcattg
ggggctaagatgatccttcaggtgcatgacgaactcaacttctcttgccccaaggcagag
ttggatcgcctctccgtcatcatcagagaagagatggaaggggtatgcccatcactctca
gtacctctcactgtggacataggcagtggtgacaattggctccaagcgcactga
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