KEGG   Porphyromonas cangingivalis: NCTC12856_01601
Entry
NCTC12856_01601   CDS       T06514                                 
Symbol
gyrB_1
Name
(GenBank) DNA gyrase subunit B
  KO
K02622  topoisomerase IV subunit B [EC:5.6.2.2]
Organism
pcag  Porphyromonas cangingivalis
Brite
KEGG Orthology (KO) [BR:pcag00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcag03032]
    NCTC12856_01601 (gyrB_1)
   03036 Chromosome and associated proteins [BR:pcag03036]
    NCTC12856_01601 (gyrB_1)
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:pcag02048]
    NCTC12856_01601 (gyrB_1)
Enzymes [BR:pcag01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     NCTC12856_01601 (gyrB_1)
DNA replication proteins [BR:pcag03032]
 Prokaryotic type
  DNA Topoisomerases
   NCTC12856_01601 (gyrB_1)
Chromosome and associated proteins [BR:pcag03036]
 Prokaryotic type
  Chromosome partitioning proteins
   Other chromosome partitioning proteins
    NCTC12856_01601 (gyrB_1)
Prokaryotic defense system [BR:pcag02048]
 Toxin-antitoxin system (TA system)
  Type II TA system
   Type II TA system related factors
    NCTC12856_01601 (gyrB_1)
SSDB
Motif
Pfam: DNA_gyraseB Toprim HATPase_c DNA_gyraseB_C HATPase_c_3
Other DBs
NCBI-ProteinID: VEJ04268
LinkDB
Position
1:1834321..1836210
AA seq 629 aa
MSDQQPLISDEDIALSEAQRKYSDEAVRTLDPMEHIRQRPGMYIGKLGDGSSPDDGIYIL
LKEVIDNAIDEFAMGFGRMVRITITDNREVFVRDFGRGIPQGSLKDAVGKMNTGAKYDNE
VFKKVVGLNGVGLKAVNALSSRMEVTSYREGKGKTVIFEKGQLVSETDLFDAPEDKDGTA
VRFIPDDTLFKGYAYREDFVMDMIRMYSYLHTSLNFNLNGKRYLSKSGLMDLLEDTMTSD
PLYPIIHFTDKDIEVAITHSSQYGEEYHSFVNGQNTIHGGTHLSAFKEAVARTIREFYGK
SFDFNDIRSGIVAAVSIRIQDPLFESQTKTKLGSKEIEEGGVTIQKFIGDFLKTHLDNFL
HKNPATAEALQKKILESEKERKAIAGITKIAKERAKKAAIHNKKLRDCSYHFNEPKAPNP
EKTSIFITEGLSASGSITQSRDANYQAVFSLRGKPLNSYGLSKRVVYENEEFNLLQAALN
IEDSIDNLRYNKIIVATDADVDGMHIRLLIITFFLQFFPELIRQNHVFILQTPLFRVRDK
QDKETIYCYDEKERDAAMAKLGKGCSVTRFKGLGEIKAEEFKAFIGEDMRLDPVVMKKED
NIKELLDFYMGKNTPDRQDFIVHNLEPEE
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgagcgaccaacaacccctcatatcagacgaagatatcgccctctccgaggctcagcgt
aagtacagcgacgaagctgtacgtaccctcgatcctatggaacacattcgccaacgcccc
ggtatgtatatcgggaagctcggcgacggctcatcgcctgatgacggtatatatatcctt
ctcaaagaggtgatagacaatgccattgatgagtttgcgatgggcttcggtcgtatggtt
cgcatcacgatcacggacaatagggaagtctttgtcagagactttggtcgaggtattccc
caaggttcgctcaaagatgccgtcggcaagatgaataccggagccaagtacgacaacgaa
gtcttcaagaaggtcgtcgggctcaacggtgtcggtctcaaggccgtcaatgcgctctcc
tctcgcatggaggtcacctcttaccgtgaggggaaggggaagaccgtcatcttcgagaag
ggacagcttgtctccgagaccgatctcttcgatgctcccgaagataaggatggtactgcc
gtacgtttcattccggatgatacactcttcaagggttatgcctatcgtgaagattttgtg
atggatatgatacgtatgtattcgtatcttcacacctcacttaacttcaatctcaacggc
aagcgttacctctccaagtccgggcttatggatctcctcgaagacaccatgacctccgat
cctctctatcccatcatccacttcaccgacaaagacatcgaagtcgccatcactcactct
tcgcagtacggtgaggagtaccactcgtttgtcaacgggcagaacaccatccacggcggt
acacacctctctgcattcaaggaggcggtcgcaaggacgatcagagagttttacggcaag
tcattcgacttcaacgatatccgttcgggcattgtcgcggctgtgagcatccgtatccaa
gatccactcttcgagagtcagaccaagaccaagctcgggtcgaaggagatcgaagagggg
ggggtgacgatacagaagttcatcggagacttcctcaagactcatttggacaatttcctt
cacaaaaatcctgctactgctgaggcacttcagaagaagatccttgagagtgagaaggag
cgcaaagccattgccggtatcaccaagattgccaaagagcgtgccaagaaggctgccatc
cacaacaagaagctccgcgactgctcctaccacttcaacgagcccaaagcccccaatcct
gagaagacatccatctttatcaccgagggactttcggccagcggtagtatcactcagagt
cgtgatgccaactatcaggcggtcttctccctccgtggtaagccgctcaattcgtacgga
ttgtccaaacgagtggtgtatgagaacgaagagttcaacctccttcaggcggccctcaat
atcgaagactccatcgacaaccttcgttacaacaagatcattgtcgctaccgatgccgat
gtcgacggtatgcacatccgtctgctcatcatcaccttcttcttgcagttcttccccgaa
ctcatacgccaaaatcatgtcttcatccttcagacccccctcttccgagttcgagacaag
caggataaggagacgatctactgttatgacgagaaggagcgtgacgctgctatggccaag
ctcggcaaaggctgttcggtcacacgattcaaggggcttggtgagataaaggcagaggag
ttcaaggccttcatcggcgaagatatgcgcctcgatcccgtggtgatgaagaaagaggac
aacatcaaagagcttcttgacttctacatgggtaagaatacccccgaccgtcaagacttc
atcgtgcataatctcgaacctgaagaataa

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