Pasteurella canis: K7G93_000038
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Entry
K7G93_000038 CDS
T07908
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcai
Pasteurella canis
Pathway
pcai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K7G93_000038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcai03019
]
K7G93_000038
03009 Ribosome biogenesis [BR:
pcai03009
]
K7G93_000038
Enzymes [BR:
pcai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K7G93_000038
Messenger RNA biogenesis [BR:
pcai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K7G93_000038
Ribosome biogenesis [BR:
pcai03009
]
Prokaryotic type
rRNA helicases
K7G93_000038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEC23337
LinkDB
All DBs
Position
33033..34859
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AA seq
608 aa
AA seq
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MTETKMTFKDLGLPEFLINAVSDLGFEIPSPIQQTCIPYLLEGNDVLGMAQTGSGKTAAF
SLPLLAQLNLDKKYPQMLVMAPTRELAIQVADACEQFCKYAKNVNIVTLYGGQRYDIQLR
ALRQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEE
HQTALFSATMPEPIRRITKRFMHDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFL
EVENFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV
ATDVAARGLDVERISLVINYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNI
EHLTKKPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLELYRSLLEDMFTADQDQEDI
AAAMLMLLQGKQKLILPPDPIIDRKTSRGERGERRDRSGRENPRSAERRGYGNPQPMDLY
RIEVGRLDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELPQGMPKELLKVFEKTR
VMNKQMQMSFVNAGNSSKRDDFGGERRSGKRKDRSDEPRFAREDRKFKEKSHRTFSERPR
KERRDRNK
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacgaaaatgactttcaaagatttaggcttgcctgaatttcttattaacgct
gtatctgatctaggttttgaaatcccatctcctatccaacaaacctgtattccatatctt
ttagaaggtaacgatgtcttaggtatggctcaaacaggtagcgggaaaacggctgctttc
tctttgcctttattggcacaattaaatttagataaaaagtatccacaaatgttggttatg
gcaccaacacgcgaattagcaattcaagtagctgatgcctgtgaacaattttgtaaatat
gcaaaaaatgtcaatatagtcacgctttatggtggtcaacgttatgacattcaattacga
gcgttacgtcaaggtgctcaagtagtagttggaacacctggtcgtattttagatcatatt
cgtcgcgggacattggatttatctaatttacgctttatggtattagatgaagcggatgaa
atgttacgtatgggatttattgatgatgtggaaactgtcatggcagaattgcctgaagag
catcaaacagcgttgttctcagcgacaatgcctgaaccaattcgccgtattactaaacgt
tttatgcatgatcctaaagaaatcaaaattaaatcgacacaaaccactaaccctgatatt
acacaaagttgttggtatgtacatgggttccgtaaaaatgatgcattattacgtttctta
gaagtagaaaattttgatgcggctattatttttacacgcacaaaaacaggtactcttgat
gtcactgaattattagagaaacatggattccgtgcagcggcactgaatggggatatgaca
cagcaattacgcgagcaaacattagatcgtttgagaaatggtagcttagatattcttgtt
gcaactgatgtcgcagctcgtggtttagatgtggaacgtattagtcttgttatcaactat
gatatcccattagatgcagagtcttatgtccaccgtattggtcgtacaggacgtgctggt
cgtactggtcgggcattattatttgttgagccgagagaacgtcgtttattgcgtaatatt
gagcatttaacgaaaaagccgattaccgaagtggaagtaccgaatcacgaagtattacaa
gcttgccgccgtgaaaaattcaaagcgaaaattactgtacagcttgagcatcacgattta
gagctttatcgtagtttgctagaagatatgtttactgcagatcaagatcaagaggacatt
gcagctgcaatgttaatgctattacaaggtaaacaaaaattgattcttccacctgatccg
attattgatcgtaaaacttctcgtggtgaacgaggagagcgtcgtgaccgaagtgggcgt
gaaaacccacgttcagcagaacgccgtggttatggtaatccacagccaatggatttatac
cgtattgaagttggacgtcttgatggtgttgaagttcgccatattgtaggtgctattgca
aatgaaggtgacattaatagtcgttatattggacatattaaactttatgatgattattcg
acgattgaattaccgcagggtatgccaaaagagttattaaaagtatttgaaaaaacacgt
gtgatgaataaacaaatgcaaatgtcatttgtgaatgcgggtaatagcagtaagcgtgat
gattttggtggcgagcgccgtagtggtaagcgtaaggatcgtagtgatgagcctcgtttc
gcccgtgaggaccgtaaatttaaagaaaaaagtcaccgcacttttagtgagcgtcctcgt
aaagagcgtcgcgatcgaaataaataa
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