Pasteurella canis: K7G93_000158
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Entry
K7G93_000158 CDS
T07908
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcai
Pasteurella canis
Pathway
pcai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K7G93_000158 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcai03400
]
K7G93_000158 (mfd)
Enzymes [BR:
pcai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K7G93_000158 (mfd)
DNA repair and recombination proteins [BR:
pcai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K7G93_000158 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UEC23449
LinkDB
All DBs
Position
171708..175145
Genome browser
AA seq
1145 aa
AA seq
DB search
MTTSYFDLSIPTEANDHKIVGNVLAGADALVISEIASQYHGLTVVVTADTRSAVRLEKVL
SQFSQQTVTFFPDWETLPYDAFSPHQEIISSRLSALFNLQHHQQGILILPISTLMQRLCP
PEFLQHNVFLIKKGEHRKIEKMRLQLESAGYRAVEQVLEHGEYAVRGALLDLFPMGSMQP
YRLDFFDDEIDSIRTFDVDTQRTLAEIHSINLLPAHEFPTDNKGIEFFRAKFRETFAEIR
RDPEHIYQQVSKGTLISGIEYWQPLFFDQMASLFDYLPKESLWLDLGDIQTQGERFYQDA
QQRYESRKVDPMRPLLSPERLWQRIDEINHQLKHYPRISLKNEKVRNSIRQKNLPLQALP
ELTIQSQQKEPLKLLRQFTEQFAGNIVFSVETEGRRETLLDLLSPLKIKPQKVVALSQVA
QPSSLLISALEQGFIITQDSPLAIITETELLGERVQQRSRDKRKSVNPDTLIRNLAELKI
GQPVVHLEHGVGRYAGLVTLENAGITAEYLLLNYANESKLYVPVSSLHLISRYVGGSDES
APLHKLGSDAWVKARHKAAEKIRDVAAELLDMYAQREAQKGFEFKYDREEFQQFAATFPF
EETVDQEMAINAVIADMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTT
LLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQIVQNLSEGKIDILIGTHKLIQSDVQ
FSDLGLLIIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMAMHGIRDLSIISTP
PARRLTIKTFVKQTDDSIIREAILREILRGGQVYYLHNDVASIENCAEKLTALVPEARIT
IGHGQMRERELERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQL
RGRVGRSHHQAYAYLLTPSPKAMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELL
GSEQSGQIESIGFSLYMDLLESAVNALKAGREPSLDELTQQQVEIDLRLPALLPEEYLGD
VNMRLSFYKRIAGAEHKNALDELKVELVDRFGTLPEAARHLFQIAELRQLAKQIQIQKID
ANAQGGFIEFLATAELEPMKFLQLIQSEPTVYRFDGPTKFRFNKTFNSYKERLDFVENLL
KEILS
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgacaacctcctattttgatttatccattcccactgaagcaaatgaccataaaattgta
ggcaatgtattagcaggcgctgatgcattagttatcagtgaaatcgctagtcagtatcat
ggattaactgttgttgtgaccgctgatacacgaagtgcggtacgtttagagaaagtttta
tcacaatttagccaacaaacagtcacattttttcctgattgggaaacgttaccctatgat
gctttttcacctcatcaagagatcatttcttcacgtctaagtgcattgtttaatttacaa
catcaccaacaaggcatattgattttacctattagcacgttaatgcagcgtttatgcccg
cctgaatttttacagcataatgtttttttgattaaaaaaggtgaacatcgaaaaattgag
aaaatgcgcttacaactggaaagtgcgggctatcgtgcagtagagcaagtcttagaacat
ggggagtatgcagtacggggcgcactgttagacttatttcctatgggcagtatgcagccg
tatcgtttagatttttttgatgatgaaattgactcaattcgaacatttgatgtagacaca
caacgtacattagctgaaattcactctattaatttattacctgcacatgaatttcctact
gataataaagggattgagtttttccgagcgaaatttcgcgaaacctttgcagaaattcgc
cgcgacccagaacatatttatcaacaagtgagtaagggtactttaatttcagggattgag
tattggcaaccacttttttttgaccaaatggcaagtttgtttgattatttaccgaaggaa
agcctatggctggatttaggggatattcaaacacaaggtgaacgtttttatcaagatgca
caacaacgctatgaaagccgcaaagtcgatccgatgcgaccattactatcgcccgagcgc
ttatggcagcgtattgatgagattaatcatcaactaaaacactatccgagaattagccta
aaaaatgaaaaagtacgtaattcaatacgtcaaaaaaatttacccttgcaagcattacct
gagctgacgattcaatcacagcaaaaagagccactgaaattattacgtcaatttactgag
cagtttgctggtaatattgttttttcagtagaaacagaagggcggcgagaaaccttatta
gacttgctgtcaccgctgaaaatcaaaccacaaaaagtagtagccctttcacaagtggca
cagccaagtagcttattaattagtgcgttagagcaaggatttatcattacacaagattca
ccattggctattattactgaaacagagttattaggtgagagagtacaacagcgtagtcga
gataagcggaaatctgttaatccagatacattaatccgtaatctcgcggaactgaaaatt
gggcaaccagtcgtacatttagaacatggtgtagggcgttatgcaggtctagtcacgctt
gaaaatgctgggattacagcagagtatttattactcaattatgcgaatgagtctaaactt
tatgtcccagtatcatccttacatttaattagtcgttatgtcggtggttcagatgaaagt
gcgccattgcataagcttgggagtgatgcatgggttaaagcacgtcataaagcagcagaa
aaaattcgtgatgtagcagccgaattattagatatgtatgcacaacgtgaagcacaaaaa
ggcttcgagtttaaatatgatcgtgaagaattccagcagtttgcggcaacgttccctttt
gaggaaactgttgatcaagaaatggcaattaatgcagtaattgctgatatgtgtcaacca
aaagcaatggatcgtcttgtatgtggtgatgtgggttttggtaaaacagaagttgcaatg
cgtgcagcatttttagctgttatgaatcataagcaagtggcagtcctagtgccaacgacg
ttacttgcccagcagcattacgaaaactttaaagatcgttttgcgaatttacctgtgaat
gtagaggtcctttctcgctttaaaacagcgaaagaacaaaagcagatagtacagaattta
tcagaaggaaaaatcgatatcctaattggtacacataaattaattcaatcagatgtacag
tttagtgatttaggtttattgattattgatgaagaacatcgttttggtgtacgccaaaaa
gaacgcattaagcaattgcgagcaaatattgatattcttactttaacagctacgccaatc
ccacgtaccttaaatatggcaatgcacggtattcgtgatttgtcgattatttcaaccccg
ccagcacgccgtttgacgataaaaacgtttgttaagcaaacagatgatagcattattaga
gaagccattctgcgtgaaattttacgtggtggacaggtctattatttacataatgatgtc
gcaagtattgaaaattgtgctgaaaaacttaccgcacttgtacccgaagctcgaattaca
attggtcatgggcagatgcgggaacgtgaattagaacgtgttatgtcggatttttatcat
cagcgttttaatgtccttgtttgttcaacgattattgaaacaggcattgatgttcctacg
gcaaatactattattattgagcgagcggataattttggtttagcacaattacatcaatta
cgtggtcgagtgggccgttctcatcatcaggcatatgcttatttattaacgccttcacca
aaggctatgacaaaagatgcacaaaaacgccttgaagcactggaaagtttagataattta
ggtgcgggttttattcttgctacacacgatctagaaattcgtggtgctggtgaattgtta
ggttcagaacaaagtgggcaaattgaatctattggtttttcactttatatggatttattg
gaaagtgctgttaacgccctgaaagcaggtcgagagccttcgttagatgaattaacacaa
caacaagtagaaattgatttacgcctacctgctttattaccagaggagtatttaggtgat
gtcaatatgcgtttatccttctataaacgtatcgcaggtgctgaacataaaaatgcatta
gatgagttaaaagtcgaacttgttgatcgtttcggcacactacccgaggctgctcgtcat
ttatttcagatcgctgaattgcgtcaattagcgaaacagattcaaatacagaaaattgat
gcgaatgcacaaggtggctttatcgagtttttagccacagctgaattagagccaatgaaa
ttcctacaacttattcaatcagaaccgacagtttatcgttttgatggtccaacgaagttt
agatttaacaaaacatttaatagttataaagagcggttagattttgtagaaaatttattg
aaagagattttaagttaa
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