Saccharococcus caldoxylosilyticus: BV455_00662
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Entry
BV455_00662 CDS
T07489
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcal
Saccharococcus caldoxylosilyticus
Brite
KEGG Orthology (KO) [BR:
pcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcal03032
]
BV455_00662 (topA)
03400 DNA repair and recombination proteins [BR:
pcal03400
]
BV455_00662 (topA)
Enzymes [BR:
pcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BV455_00662 (topA)
DNA replication proteins [BR:
pcal03032
]
Prokaryotic type
DNA Topoisomerases
BV455_00662 (topA)
DNA repair and recombination proteins [BR:
pcal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BV455_00662 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
ATG19
Toprim_2
zf_Rg
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QXJ37400
LinkDB
All DBs
Position
complement(638829..640904)
Genome browser
AA seq
691 aa
AA seq
DB search
MSDYLVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDINNGYEPKYITIRGK
GQIIKELKTAAKKAKKVFLAADPDREGEAIAWHLANMLDLDIHSDCRVVFHEITKDAIKE
SFQHPRAINMNLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLIIDREK
EIKQFQPEEYWTIQAEFVKGNETFTASFYGVDGEKMDLKKEADVSSVLERINGNDFTVKT
VTKKERKRNPVPPFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIDLGSEGTVGLITYMR
TDSTRISESAQQEAITYIESVFGKEFVTQEKRKEKKSANAQDAHEAIRPTSAFRDPEKVK
PYLTRDQFRLYKLIWERFIASQMAAAVLDTMSVELENEGVVFRASGSKVKFPGFMKVYVE
GTDDQTEEQDRFLPDLQEGEKVVGKKIEPKQHFTQPPPRYTEARLVKTLEELGIGRPSTY
APTLDTIQKRNYVVLENKRFVPTELGEIVLELILEFFPEIIDVEFTAKMEKNLDEIEEGK
VEWVKVVDEFYREFEKRLQIAEKEMKEVEIKDEPAGIDCEVCGSPMVYKMGRFGKFVACS
NFPECRNTKPIVKEIGVKCPKCHEGNIVERSSKKKRIFYGCDRFPQCDFVSWDKPLARPC
PKCGGLLVEKKLKKGVQVQCTACDYEEEPQS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattaccttgtcatcgtggaatcgccagcgaaagcgaagacgattgagcgatat
ctaggcaaaaaatataaagtaaaagcttccatgggacatgttcgagatttgccaaaaagc
caaatgggcgttgatataaataacggctatgagccaaaatacattacgattcgcggaaaa
ggccagattattaaagaattaaaaacagcagcaaaaaaagcgaaaaaagtgtttctcgcc
gccgacccggatcgcgaaggggaagcgatcgcctggcatttagcgaacatgcttgatctt
gacatacattccgattgccgcgttgtctttcatgaaattacaaaggatgccattaaagag
tcgtttcagcatccgcgtgcgatcaatatgaatcttgttgacgcgcagcaggcgcggcgc
gttttagatcgccttgtcgggtacaacatcagcccgctgctttggaaaaaagtcaagaaa
ggattaagcgcgggacgcgttcagtctgttgccttgcgcctcattatcgaccgcgaaaaa
gaaattaaacagtttcagccggaagaatattggacgattcaagcggagtttgtgaaagga
aacgaaacatttaccgcttctttttacggtgtcgacggggaaaagatggacttaaaaaag
gaagcggacgtttcttctgtgctcgagcgaataaatggcaatgatttcaccgtcaagacg
gtaacgaaaaaggagagaaagcgaaatcctgtgccgccgtttactacctcctccttgcag
caagaagcagcgcgcaaattgaattttcgggcgaagaaaacgatgatgatcgcccagcag
ctgtatgagggaattgaccttggcagcgagggaacggtcgggttaattacgtacatgcgc
acggactcaacaagaatttccgaaagcgcccagcaagaagcaataacgtatattgaatcg
gtatttggcaaggaatttgtcacacaagaaaaacgaaaagaaaagaaaagtgcgaatgcg
caggacgctcatgaagcgatccgtccgacatctgcgtttcgcgatccggaaaaggtaaaa
ccgtatttaacgcgtgaccagtttcggctgtataagctgatttgggaacgttttatcgcc
agccaaatggccgctgccgtattggatacgatgagcgtcgagctcgaaaatgagggggtc
gtctttcgcgccagcggctccaaagtcaaatttccggggtttatgaaagtgtacgtagaa
ggaacggacgatcagacggaagaacaagaccggtttcttcccgatttacaggaaggggag
aaggtggtcggcaaaaagattgaaccgaagcagcattttacccagccgcctcctcgttat
acggaagcgcggcttgtcaagacgctagaggaacttggcatcggccggccgtctacgtat
gcgccgacgcttgatacgattcaaaagcgaaactacgtcgtgctagaaaataagcgcttt
gttccgaccgaactcggagaaatcgtgctggagcttattttagagtttttcccggaaatt
attgatgtcgagtttacggcaaaaatggagaaaaatttggatgaaattgaagaaggcaaa
gtagaatgggtcaaagtggtcgacgaattttaccgcgaatttgaaaaacggctgcaaatc
gcggaaaaggaaatgaaagaagtcgagattaaagacgagccggcgggaatcgactgcgaa
gtgtgcggaagcccaatggtatataaaatgggacgtttcggcaagtttgtcgcctgctcg
aattttccggaatgtcgcaatacaaagccaatcgttaaggaaatcggcgtcaaatgtccg
aaatgccatgaaggcaatattgtcgaacgcagcagcaagaaaaagcggattttttacggc
tgcgaccgctttccgcaatgcgacttcgtttcatgggataagccgctcgcccgtccttgt
ccgaagtgcggcggactattggtggaaaagaaactgaaaaaaggcgtgcaagtgcaatgc
acggcatgtgactacgaggaagaaccgcaatcgtaa
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