Saccharococcus caldoxylosilyticus: BV455_01398
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Entry
BV455_01398 CDS
T07489
Symbol
rlmCD_2
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcal
Saccharococcus caldoxylosilyticus
Brite
KEGG Orthology (KO) [BR:
pcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcal03009
]
BV455_01398 (rlmCD_2)
Enzymes [BR:
pcal01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
BV455_01398 (rlmCD_2)
Ribosome biogenesis [BR:
pcal03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
BV455_01398 (rlmCD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
PrmA
Methyltransf_11
RrnaAD
PCMT
TRM
Methyltransf_32
Ubie_methyltran
UPF0020
Methyltransf_12
N6_N4_Mtase
Methyltransf_4
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
QXJ38110
LinkDB
All DBs
Position
complement(1353618..1354994)
Genome browser
AA seq
458 aa
AA seq
DB search
MANIEAPVMKNEYYDVTFEDLTHDGLGVAKIDGFPIFVKNGLPGEKAKIKVIKVKKGYGY
GRLIELHEQSPDRVAPLCPIYKQCGGCQLQHLSYEGQLKAKQKHVKEVMARIGKLENVIV
HPVIGMKDPWRYRNKAQVPVGEREGGLVAGFYQERSHEIIDMDACLIQQEMNDVVVQTVK
KICEKYRIPAYNEVSHKGVLRHIMARYGAATKEVMVVLITRTEELPHKKKIVQEIIDSVP
NVKSIIQNINPKKTNVIMGDETKVLWGAECIYDYIGDIKFAISARSFYQVNPEQTKVLYE
KALEYAGLTGKETVIDAYCGIGTISLFLAKKAKKVYGVEVVPEAIEDAKRNAELNGITNV
EFAVGEAEAVIPQWYEQGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLA
RDLRILEDGGYKTLEVQPVDMFPHTAHVECVAKLTLKL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacatcgaagcaccagtaatgaaaaacgaatattatgatgtgacatttgaagat
ttgacacatgacggtttaggagtcgctaaaattgacgggtttcccatttttgtcaaaaac
gggctgccgggcgagaaggcgaaaatcaaagtcatcaaagtgaaaaaaggatatggctac
ggacgccttatcgagctgcatgagcaaagcccggaccgcgtcgcgcccctgtgcccgatt
tacaagcagtgcggcggctgccagctgcagcacttaagctacgaaggacagctcaaagca
aaacagaaacatgtgaaagaagtaatggcgcgtatcggcaaattggaaaatgtcatcgtt
catcctgtcatcggcatgaaagacccatggcgctaccgcaacaaagcgcaagtgcctgtc
ggcgagcgcgaaggtgggctggtcgcgggattttaccaagagcgcagccatgaaattatc
gatatggatgcctgtctcatccagcaggaaatgaacgatgtcgtcgtacagacggtgaaa
aaaatttgcgaaaaataccgcatccctgcctataacgaagtatcgcataaaggggtgctc
cgccatattatggcgcgctacggggcggcgacgaaagaagtcatggtcgtcctcattacc
cgcacggaagagttgccgcataaaaagaaaattgtgcaagaaattattgactccgtgcca
aatgtaaaatcgattatccaaaacattaacccaaaaaagacgaatgtgattatgggtgac
gagacgaaagtattgtggggagccgaatgcatttacgattacatcggtgacattaaattc
gcgatctcggctcgatctttctatcaagtcaacccggaacaaacaaaagtgctatatgaa
aaggcactcgaatatgctggtttgacgggaaaggaaacggtgatcgacgcttattgcggc
attggtacgatttccttgtttttagcgaaaaaagcgaaaaaagtgtacggcgtcgaagtg
gtgccggaagcgattgaagatgcaaaacgcaatgctgaattaaacggcatcaccaacgtc
gaatttgccgtcggcgaggcggaagcggtcatcccgcaatggtacgaacaaggcatccgc
gcggactgtatcgttgtcgacccgcctcgcaaaggctgcgatgaaacgcttttacaaacc
atcattgccatgaagccgaagcgcgttgtgtacgtttcctgcaacccggcgacattggca
agggatttacgaattctcgaagacggcgggtataaaacattggaagtgcagccggttgat
atgttcccgcataccgcgcatgtggagtgtgtcgctaaactaaccttgaagttgtag
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