Saccharococcus caldoxylosilyticus: BV455_01625
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Entry
BV455_01625 CDS
T07489
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pcal
Saccharococcus caldoxylosilyticus
Pathway
pcal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BV455_01625 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcal03021
]
BV455_01625 (rpoA)
03400 DNA repair and recombination proteins [BR:
pcal03400
]
BV455_01625 (rpoA)
Enzymes [BR:
pcal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BV455_01625 (rpoA)
Transcription machinery [BR:
pcal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BV455_01625 (rpoA)
DNA repair and recombination proteins [BR:
pcal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BV455_01625 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
SAM_EPH
RAD51D_N
DUF961
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QXJ38306
LinkDB
All DBs
Position
complement(1574809..1575753)
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPKIETVEISEDAKYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSVQIDG
VLHEFSTIDGVVEDVTAIILNIKKLALKIYSDEEKTLEIDVQGEGVVTAADITHDSDVEI
LNPDLHIATLAEGGRLRMRMTAKRGRGYVPAEANKREDQPIGVIPIDSIYTPVSRVSYQV
ENTRVGQVTDYDKLTIDVWTDGSIGPKEAISLGAKILTEHLNIFVSLTDEAQNAEIMVEK
EEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELTQKTEEDMMKVRNLGRKSLEEVK
AKLAELGLSLRKDD
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaattgaaaaaccgaaaatcgaaacggttgaaatcagcgaagatgccaaatat
ggcaaattcgtcgtcgaaccgcttgagcgtggatatggtacaactttgggtaactcctta
cgtcgtatcctattatcttcactccctggtgctgctgtgacatcggtacaaatagatggt
gtactgcatgagttctcaacgattgatggcgtcgtagaagatgtgacagcaatcattttg
aacataaaaaaattagcgttaaagatttattccgatgaagaaaaaacgttggaaatcgat
gtacagggtgaaggagttgtcacagctgctgatattactcacgacagcgatgtggaaatt
ttaaacccggaccttcatattgctacgttggcagaaggcgggcgtttgcgtatgagaatg
accgccaaacggggacgtgggtatgttccagctgaggccaacaagcgcgaggatcagcca
ataggcgttatccctatcgattcgatttatacacctgtttcacgcgtttcttatcaagta
gagaatacgcgtgtcggacaagtgacggactatgataagttaaccattgatgtgtggaca
gatggaagcatcggaccgaaagaagccatttccctcggtgcgaaaattttaaccgagcac
ttaaatattttcgtcagcctgacagatgaagcgcaaaatgcggaaatcatggtggaaaaa
gaagaagatcaaaaagaaaaagtgctcgaaatgactattgaagagcttgatctttctgtc
cgttcctacaactgcttgaaacgtgccggtattaacacggttcaagaactgacgcaaaaa
acagaagaagatatgatgaaagtgcgcaatcttggtcgcaaatctcttgaagaagtaaaa
gcgaagctggctgaacttgggcttagcctgcggaaagatgactag
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