Saccharococcus caldoxylosilyticus: BV455_03197
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Entry
BV455_03197 CDS
T07489
Symbol
hup
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
pcal
Saccharococcus caldoxylosilyticus
Brite
KEGG Orthology (KO) [BR:
pcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcal03032
]
BV455_03197 (hup)
03036 Chromosome and associated proteins [BR:
pcal03036
]
BV455_03197 (hup)
03400 DNA repair and recombination proteins [BR:
pcal03400
]
BV455_03197 (hup)
DNA replication proteins [BR:
pcal03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
BV455_03197 (hup)
Chromosome and associated proteins [BR:
pcal03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
BV455_03197 (hup)
DNA repair and recombination proteins [BR:
pcal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
BV455_03197 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
DUF2267
HU-CCDC81_euk_1
Ribosomal_L12
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
QXJ39831
LinkDB
All DBs
Position
3057218..3057490
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AA seq
90 aa
AA seq
DB search
MNKTELINAVAETSGLSKKDATKAVDAVFESITEALRKGDKVQLIGFGNFEVRERAARKG
RNPQTGEEMEIPASKVPAFKPGKALKDAVK
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaataagacagaattaattaacgcagttgccgaaactagcggtctttccaaaaaagat
gcaacgaaagcggtagacgctgtatttgaatctattacagaagcgctaagaaaaggcgat
aaggtccaattaatcggcttcgggaactttgaggtgcgcgagcgcgcggctcgtaaaggg
cgtaacccgcaaacaggcgaggaaatggaaatccctgcgagcaaagttcctgcattcaaa
ccaggcaaagctcttaaagacgctgtaaaataa
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