Aquipseudomonas campi: HNE05_04780
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Entry
HNE05_04780 CDS
T07561
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pcam
Aquipseudomonas campi
Brite
KEGG Orthology (KO) [BR:
pcam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcam03016
]
HNE05_04780 (rnd)
Enzymes [BR:
pcam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HNE05_04780 (rnd)
Transfer RNA biogenesis [BR:
pcam03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HNE05_04780 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Ribosomal_L27_C
Motif
Other DBs
NCBI-ProteinID:
QKE62700
UniProt:
A0A6M8FEV4
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All DBs
Position
1558103..1559221
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AA seq
372 aa
AA seq
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MAIDIQWILDDASLARHCADWRRLPFVALDTEFMRVDTFYPIAGLLQVGDGQHAFLVDPL
TISDWSPFAELLEDQAVVKVLHACSEDLEVFLRLTGSLPNPLFDTQLAAGYLNLGFSMGY
SRLVQEVLGIELPKGETRSDWLQRPLSPTQISYAAEDAQHLAELYLVLQPKLSADKHAWV
LEDGAELVSNLRREVDPDLLYREAKLAWKLSRQQLAVMRALCAWRERQARVRNQPRNHII
REHSLWPLAKTQPDNLVALARIEEMHPKTVRRDGETLLQLIQEAAALPPEQWPEALPQPL
PLESTALLKQLRVVGQREAERLQIAPELMLRKKSLEALLKSGYPNGPYQLPDNLRGWRRE
LMGAALLAALEN
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtggctatcgatattcagtggatcctcgacgacgccagcctggcccgtcactgcgccgac
tggcggcgtttgccgttcgttgccctcgacaccgagttcatgcgggtcgacaccttctac
ccgatcgccggcctgctgcaggtgggtgatggccagcacgccttcctcgtcgacccgctg
actatcagcgactggtcgccgtttgccgagttgctggaagatcaggccgtggtcaaggtg
ctgcatgcctgcagcgaagacctggaagtgttcctgcgcctgaccggcagcctgccgaac
ccgttgttcgatacccagttggccgccggctacctcaacctgggcttctccatgggctat
tcgcgcctggtgcaggaggtgctaggcatcgaactgcccaagggcgagacccgttccgac
tggttgcagcgcccgttgtcgccgacccagattagctacgccgccgaggatgcccagcac
ctggccgagttgtatctggtgctgcagcccaaactgtccgccgacaaacacgcctgggtg
ctggaagacggcgccgagctggtcagcaacctgcgccgcgaagtcgacccggatctgctc
taccgcgaagccaagctggcctggaaactgtcacgccagcagctggcggtgatgcgcgct
ctgtgtgcctggcgcgaacgccaggcgcgggtgcgcaaccagccgcgcaatcacatcatc
cgcgagcactcgctgtggccgctggccaagacccagccggacaacctggtagccctggcg
cgcatcgaagagatgcacccgaaaaccgtgcgccgggatggcgaaaccctgctacagctg
atccaggaagccgctgcgttgccgcccgagcagtggcccgaagccctgccgcagccgctg
ccgctggagtccactgcgctgctgaagcagctgcgcgtggtcggccagcgtgaggccgag
cgcctgcagatcgctccggaactgatgctgcgcaagaaatccctcgaggccctgctgaaa
agcggttacccgaatggcccttaccagctgccggacaacctgcgtggctggcgccgtgaa
ctgatgggcgccgcgttattggccgccctggaaaactga
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