Aquipseudomonas campi: HNE05_05545
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Entry
HNE05_05545 CDS
T07561
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcam
Aquipseudomonas campi
Brite
KEGG Orthology (KO) [BR:
pcam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcam03032
]
HNE05_05545 (topA)
03400 DNA repair and recombination proteins [BR:
pcam03400
]
HNE05_05545 (topA)
Enzymes [BR:
pcam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HNE05_05545 (topA)
DNA replication proteins [BR:
pcam03032
]
Prokaryotic type
DNA Topoisomerases
HNE05_05545 (topA)
DNA repair and recombination proteins [BR:
pcam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HNE05_05545 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QKE62842
UniProt:
A0A6M8FF77
LinkDB
All DBs
Position
1716701..1719310
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AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASSAKEPVKRGKAAAGEA
PALSPKEKAKRQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDINRVNAQQARRFLDRV
VGYMVSPLLWQKIARGLSAGRVQSVAVKLVVEREKEIRAFVPEEYWEVHADLGTAKAATV
RFEVVREKGEAFKPVNEAQAMAALEKLKASAYSIAKREDRPTSSKPSAPYITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVEMVRGFIESEYGKKYLPAKPTV
YSSKEGAQEAHEAIRPSDVNLRPTQISGMERDAERLYELIWRQFVACQMPPAEYLSTSVT
VASGTFELRAKGRILKFDGYTKAQPQQSKPGEDDVLPDMNEGEALKLIKLDPSQHFTKPP
ARFSEASLVKELEKRGIGRPSTYAAIISTIQERGYVAVQNRRFYAEKMGDIVTERLNESF
SNLMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFKKKLEVAGEADSGMRANQPTLTD
IACRDCGRPMMIRTASTGVFLGCSGYALPPKERCKATINLIPGDEIAADDEGESESRVLL
NKHRCPICATAMDAYLLDETRKLHICGNNPDCSGYEIEQGQYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNSTCKNTRKLLRSGEAAPPKMDAVQMPELKCEKVNDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLELIPHKDEIDPKYHFLLDAPKKDPEGRPAVIRYSRKTKE
QYVQSEVDGKPTGWRAFFSGGKWKVESKG
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagcatcggccatatccgtgacctgcctaccagc
ggttcggccagtagcgccaaggagcccgtcaagcgtggcaaggctgccgctggcgaagcg
ccggcgctgtcgcccaaggaaaaggccaagcgccagctggtgtcgcgcatgggcgtcgat
ccggagcatggctggaaggccaagtacgagattctgcccggcaaggaaaaggtgatcgag
gaactgcgccgcctggccaaggatgccgacaccatctatctcgcaactgacttggatcgc
gagggggaagccattgcctggcacctgcgcgaagccattggtggtgatgacagccgctac
aagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggaggccttctccaagccc
ggcgagctggacatcaaccgggtcaacgcccagcaggcgcggcgcttcctcgatcgcgtg
gtcggctacatggtctcgccgctgctgtggcagaagatcgcccgtggcctgtccgccggc
cgtgtgcagtcggtggcagtgaaactggtggtcgagcgcgagaaagagatccgcgccttc
gtcccggaagaatactgggaagtgcacgccgacctcggcaccgccaaggccgccaccgtg
cgtttcgaagtggtgcgcgagaagggcgaggctttcaagccggtcaacgaagcccaggcc
atggccgcgctggagaagctcaaggcgtccgcctacagcatcgccaagcgtgaagaccgg
ccgaccagcagcaagccgtcggcaccctacatcacgtcgaccctgcagcaggcggcgagc
aatcgtctcggtttcggcgtgaagaagaccatgatgatggcccaacgcctgtatgaggct
ggctacatcacctatatgcgtaccgactcgaccaacctctcggccgatgccgtggagatg
gtgcgtggcttcatcgaaagcgagtacggcaagaagtacctgccggccaagccgactgtc
tattcgagcaaggagggcgcccaggaggcgcatgaggcgatccgtccgtccgacgtcaac
ctgcgtccgactcagatctccggcatggagcgcgacgctgagcgcctctacgagctgatc
tggcgccagttcgtcgcctgccagatgccgccagccgaatacctgtcgaccagcgtcacc
gtggcctccggcaccttcgagctgcgcgccaagggccgtatcctcaagttcgacggttac
accaaggcacagccgcagcagagcaagccgggcgaagacgacgtactaccggatatgaac
gaaggcgaggcgctcaagctgatcaagcttgaccccagccagcacttcaccaagccgccg
gcgcgtttctccgaagccagtctggtcaaggagctggagaagcgcggtatcggtcgtccg
tcgacctacgcggcgatcatctcgaccatccaggagcgtggctatgtggcggtgcagaac
cgtcgcttctacgccgagaagatgggtgacatcgtcaccgagcgcctcaacgaaagcttc
tccaacctgatggactacggcttcaccgccggcatggaagagcatctggatgacgtcgct
cagggcgagcgcgactggaagcacgtgctcgacgagttctacggcgacttcaagaagaag
ctggaagtggctggagaagccgacagcggcatgcgtgccaaccagccgaccctgaccgat
atcgcctgccgcgattgcgggcggccgatgatgatccgtaccgcctccaccggcgtgttc
ctcggctgctccggctacgccctgccgccgaaagaacgctgcaaggccaccatcaacctg
attccgggtgacgaaatcgccgccgatgacgaaggcgagtctgaatcccgcgtgctgctg
aacaagcaccgctgcccgatctgcgccacggcgatggatgcctatctgctggacgaaacc
cgcaagctgcatatctgcggcaacaacccggattgctcgggctacgagatcgaacagggc
cagtaccgcatcaagggctacgaagggccgagcctggagtgcgacaagtgcggcagcgag
atgcagctgaagaccggccgcttcggcaagttcttcggttgcaccaacagcacctgcaag
aacacccgcaagctgctgcgcagcggcgaggcggcgccgccgaagatggacgcggtgcag
atgcccgagctcaagtgcgagaaagtcaacgacacctacgtgctgcgtgacggcgcttcc
ggtctgttcctggctgccagccagttcccgaagaaccgcgaaacccgtgcgccactggtg
ctggagctgatcccgcataaagacgagatcgatcccaaataccacttcctgctggatgca
ccgaagaaagatccggaaggccgtccggcggttatccgctacagccgcaagaccaaggag
cagtatgtgcagagcgaggtggacggcaaacccaccggctggcgcgccttcttttcgggc
ggcaagtggaaagtggaaagcaagggctga
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