Aquipseudomonas campi: HNE05_05765
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Entry
HNE05_05765 CDS
T07561
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcam
Aquipseudomonas campi
Pathway
pcam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNE05_05765 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcam03019
]
HNE05_05765 (rne)
03009 Ribosome biogenesis [BR:
pcam03009
]
HNE05_05765 (rne)
Enzymes [BR:
pcam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HNE05_05765 (rne)
Messenger RNA biogenesis [BR:
pcam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HNE05_05765 (rne)
Ribosome biogenesis [BR:
pcam03009
]
Prokaryotic type
rRNA processing factors
HNE05_05765 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QKE62884
UniProt:
A0A6M8F348
LinkDB
All DBs
Position
complement(1761217..1764267)
Genome browser
AA seq
1016 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFSKSPEGGRVNIKEVLKEGQEVIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDAPGDMGLIVRTAGLGRSSDELQ
LDLDYLVQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEAL
SFIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSI
DINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEK
VREALEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGQGIIRDVESLSLA
ILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPH
FEVQRLRDDSPEVMTGQSSYEMTPAEVEDVQPAAATRTLVRQEAALKTTPPRAAAPTPAA
APAPLAPAAATAEPSLFKGLVKSLVSLFASKEEAAAPAAEEKPAERKPRSDEQRRGGRPQ
NRRDGNRGNRGSRDEERKPREERQPREAREPREPREERQPREAREVREPREPREERQPRE
AREGQEPRRERPPREAREPREERRPRELREPLDATATDEVRSEQPRNEERAERKPREERQ
PRPPREERQPRAEQAAAVAEEEVLENGEQLDDGQEGGEGGDRPRRRSRGQRRRSNRRERQ
RDADGNLIEGSEEGAEEEGTEGAVVVTAAVAGTALISAEAAPTSEQPNEVVESAPVSDSR
NEATETAEAVVETAVAVEAPAVVVEAPFQTEAPAEVAAVEIAVVEAAPVVAEAAPVNVST
EEAAPAAAEVIVEAAAPVVSGGRAPNDPREVRRRQREAERLAAEAAAAPQAPVAVETPVA
EVAEAAPVEAEAPAEAAVAQTPAIEQSETEAAAEEVPALLVETAQQQDAEEAKPQA
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgccactcagcccgaagagttgcgtgtagccctggtagac
ggccagaaactctacgacctggacatcgagtccggcgcccgtgagcagaaaaaggccaac
atctataaaggccgcattacccgcgtcgagcccagcctcgaagcggcttttgtcgacttc
ggcgccgagcgccacggcttcctgccgctgaaagaaatctcccgcgagtacttcagcaag
tccccggaaggcggtcgcgtcaacatcaaggaagtcctcaaggaaggccaggaagtcatc
gtccaggtcgagaaggaagagcgcggcaacaaaggcgccgccctcaccaccttcatcagc
ctggccggtcgttatctggtgctgatgccgaacaacccacgtgcaggcggcatctcccgc
cgcatcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctcgacgccccg
ggcgacatgggcctgatcgtgcgcaccgccggcctcggccgctccagcgacgaactgcag
ctcgacctcgattacttggtgcaactgtggaccgcgatcaaggaagcctcgctggatcgc
gccgcgccgttcctgatctatcaggaatccaacgtgatcatccgcgctatccgcgactac
ctgcgccaggacatcggcgaagtcctggtcgatagcgtcgaagcccaggaagaagccctg
tcctttatccagcaggtcatgccgcagtacgccagcaagatcaagctgtacgaagacagc
gtgccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgaa
gtgaaactgccgtccggcggctccatcgtcatcgacccgaccgaagccctggtgtccatc
gacatcaactcggcgcgtgcgaccaaaggcggcgacatcgaagaaaccgccctgcagacc
aacctggaagcggctgaagaaatcgcccgccagctgcgcctgcgtgacatcggcggcctg
atcgtgatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagagaaa
gtccgcgaagccctggaagccgaccgcgcccgcgtgcaagtcggtcgcatctcgcgcttc
ggcctgctggaaatgtcccgtcagcgcctgcgcccgtccctgggtgaaagcagcggcatc
gtctgcccgcgctgcaacggccaaggcatcatccgcgacgtcgaatcgctgtcgctggca
atcctgcgcctgatcgaagaagaagccctgaaggaccgtaccgccgaagtccgcgcccag
gtgccgatcccggttgccgccttcctgctcaacgagaagcgcaacagcatcaccaagatc
gagctgcgcacccgcgcacgcatcatcatcctgccgaacgatcatctggagaccccgcac
ttcgaagtgcagcgtctgcgcgatgacagcccggaagtgatgaccggtcaatccagctac
gagatgaccccggccgaagtcgaagacgtccagccggcagccgccacccgcaccctggtg
cgtcaggaagctgcgctgaaaaccactccgccacgcgctgctgctccgaccccggctgca
gcgccggccccgctggccccagccgcagcgaccgcggaaccgagcctgttcaagggcctg
gtcaagtcgctggtcagcctgttcgccagcaaggaagaggccgccgccccggcagccgaa
gagaagccggccgaacgtaaaccacgcagcgatgaacagcgtcgtggtggccgtccgcag
aaccgtcgcgacggcaaccgtggcaaccgcggcagccgtgacgaagagcgtaagccgcgt
gaagaacgccagccgcgcgaagcccgtgaaccgcgtgagccacgcgaagagcgccagccc
cgtgaagctcgtgaagtccgcgagccacgcgagccccgtgaagagcgtcagccgcgcgaa
gcccgcgagggccaggagccacgccgcgagcgtccgccacgcgaagcccgtgagccgcgc
gaagagcgtcgcccacgcgaactgcgcgaaccgctggatgccaccgccactgacgaagtc
cgtagcgagcaaccgcgcaacgaagaacgcgccgagcgcaagccacgtgaagagcgccaa
ccgcgcccgccgcgtgaagagcgtcagccgcgtgccgaacaggccgctgccgtagccgaa
gaagaagtactggaaaacggcgagcagctcgatgatggccaggaaggtggtgaaggtggc
gatcgtccgcgtcgtcgctcccgcggtcagcgtcgtcgcagcaaccgtcgcgagcgtcag
cgtgatgctgatggcaacctgatcgaaggcagcgaagaaggtgccgaagaagaaggcact
gaaggcgccgtcgtcgtgaccgctgccgttgccggcaccgcactgatcagcgcagaagct
gcaccgaccagcgagcaaccgaacgaagtcgtggaaagcgctccggtcagcgacagccgc
aacgaagctactgagaccgccgaagccgtcgttgaaactgccgtagcagtggaagcaccg
gccgtggtggttgaagcccccttccagaccgaagccccggccgaagttgctgcggtagaa
atcgctgtcgtggaagccgccccggtggttgctgaagctgcaccggtcaacgtcagcact
gaagaagcggcccctgccgctgccgaagtgattgtcgaggcagccgccccggttgtcagc
ggtggccgcgcgccgaacgacccgcgtgaagtgcgtcgtcgtcagcgcgaagccgagcgc
ctggctgccgaagccgccgctgcgccgcaagcaccagtcgcggttgagacaccggtagcc
gaagtggctgaagccgcccccgtcgaagccgaggcacctgccgaagctgccgtggcgcaa
actccggccattgagcaaagcgagaccgaggcagcagcggaagaagttccggccctgctc
gtcgagaccgctcagcaacaggacgcggaagaagccaagccgcaagcctga
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