Aquipseudomonas campi: HNE05_09460
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Entry
HNE05_09460 CDS
T07561
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcam
Aquipseudomonas campi
Pathway
pcam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNE05_09460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcam03019
]
HNE05_09460
03009 Ribosome biogenesis [BR:
pcam03009
]
HNE05_09460
Enzymes [BR:
pcam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNE05_09460
Messenger RNA biogenesis [BR:
pcam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNE05_09460
Ribosome biogenesis [BR:
pcam03009
]
Prokaryotic type
rRNA helicases
HNE05_09460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
HEM4
Flavi_DEAD
DEDD_Tnp_IS110
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QKE63574
UniProt:
A0A6M8F4W4
LinkDB
All DBs
Position
complement(2541037..2542722)
Genome browser
AA seq
561 aa
AA seq
DB search
MTQEVTGTFAELGLHPSILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAA
FALPILSKIDPAKRELQALILAPTRELALQVATAFETYAKQMPGLSVVAVYGGAPMGPQL
KAIRMGAQVIVATPGRLVDHLSRNDQLLSTISHLVLDEADEMLKLGFMDDLEVIFQAMPA
SRQSVLFSATLPASIRTIAEKHLRDPKHIKIAAKTQTVSLIEQAHLMVHADQKVQAVSRL
LEVEEFDALIAFVRTKQATLDLASALEAKGYKVAALNGDIAQNQRERVIESLKDGRLDIV
VATDVAARGIDVPRITHVLNVDMPYDPESYVHRIGRTGRAGRVGRALLLVTPRERRMLQV
IERVTGQKVAEVRLPNAQQVLDARIKKLTNSLAPLVADAEASHGELLDRLVADIGCTPRA
LAAALLRKATNGQSLNLADVEREQPLVPTVSAPRERRERDGERSSGGDFAPRERRAPVPL
TEGRARCRTALGTRDGIAAKNLLGAILNEGGLAREAIGRIQIRETFSLIELPEEGLDRLL
GKLKDTRVAGKALKLRRYRED
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaagtaaccggcactttcgccgaactcggccttcatccttctattctcgct
gcgctgaccgcggtgggttacgaagagccgtccccgattcaatcccaggcgatcccggtg
atcctcgccggccacgacatgatcggccaggcgcagaccggtaccggcaagactgcagcg
ttcgccctgccgatcctgtcgaagatcgacccggccaagcgtgaactgcaggcgctgatc
ctcgcgccgacccgtgagctggccctgcaagtggccaccgcgtttgaaacctacgccaag
cagatgccaggcctgagcgtggtggccgtctacggcggcgcgccgatgggcccgcagctc
aaggccatccgcatgggtgcccaggtcatcgtggccaccccgggtcgcctggttgaccac
ctgagccgcaacgaccagctgctgtcgaccatcagccacctggtgctggacgaagccgac
gaaatgctcaagctcggcttcatggatgacctggaagtgatcttccaggccatgccggcc
agccgccagagcgtgctgttctccgcgaccctgccggcctcgatccgcaccatcgccgag
aagcacctgcgcgacccgaaacacatcaagatcgccgccaagacccagaccgtctcgctg
atcgagcaggcgcacctgatggtgcatgccgaccagaaggtccaggccgtgtcgcgcctg
ctggaagtcgaggaattcgacgccctgatcgccttcgtacgcaccaagcaagccaccctg
gacctggcctccgcgctggaagccaagggctacaaggttgccgcgctgaacggtgatatc
gcgcagaatcagcgcgagcgcgtcatcgagtcgctgaaggacggccgtctggatatcgtg
gtcgccaccgacgtggccgcccgtggtatcgacgtaccgcgcatcacccacgtactcaac
gtcgacatgccgtacgacccagagtcctacgtgcaccgtatcggtcgtaccggccgtgcc
ggtcgcgttggccgtgcgctgctgctggtgactccgcgtgagcgccgcatgctgcaggtg
atcgagcgtgtaaccgggcagaaagtcgccgaagtgcgcctgcccaacgctcagcaggtg
ctggatgcacgcatcaagaagctgaccaacagcctggcgccgctggtggctgatgccgaa
gccagtcatggcgagctgctcgaccgtctggtcgccgatatcggctgcaccccgcgtgcc
ctggccgcggccctgctgcgcaaggccaccaatggccagtcgctgaacctggctgacgtc
gagcgcgagcagccgctggtgccgacagtcagcgccccgcgcgaacgtcgtgagcgtgat
ggcgagcgcagcagcggtggcgatttcgccccgcgtgagcgtcgtgccccggtgccgctg
accgaaggccgtgcccgttgccgtaccgccctgggcactcgcgacggcatcgccgcgaag
aacctgctcggcgcgattctcaacgaaggtggcctggcccgcgaagccatcggtcgtatc
cagatccgcgagaccttcagcctgatcgaactgccggaagaaggcctcgaccgtctgctc
ggcaagctcaaggacacccgcgttgccggcaaggccctgaagctgcgtcgttatcgcgag
gattaa
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