Pomacea canaliculata (golden apple snail): 112553201
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Entry
112553201 CDS
T05881
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112553201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcan03041
]
112553201
Enzymes [BR:
pcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112553201
Spliceosome [BR:
pcan03041
]
Complex C
Other components
Step II factors
112553201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
SRP54
T2SSE
ATPase_2
AAA_23
AAA_14
DUF3663
ABC_tran
ATPase
ResIII
Motif
Other DBs
NCBI-GeneID:
112553201
NCBI-ProteinID:
XP_025076061
LinkDB
All DBs
Position
LG12:complement(13552080..13588511)
Genome browser
AA seq
1261 aa
AA seq
DB search
MASLDFDDDPGLHRLEGASGQEQGGLVIMKKKPLGDGHLFRKPDVPKVSLLGLDKLAASK
RQSDVTDGSATPKRSKVSSYKNDDDDEVEEEKDNKNFYSSNERHYRPQRIETPSHPGGVT
AEARERMSKHHRDRERGVYVSSKDRDRDRERDYKRDGDKHRNRDRDRDRDRDYRRSREGS
ERKSHRRYDEKSSRSGDRSERKDSERGSRDWEETPNRISREEITTPKLGIKDTPSRSSWD
EDDVTPPKKSSWDLPTPLRPDEEKDNWSDRSSDSRHSTRDKDSVRSQFSDRRSRTRKQND
YTPQATPTYKYNEWMNNRKKILYTPKDPLDKEKENIDEMSEEERLQWEEEQKRLDREWYS
MDQGYDDTNNPFAGTSEAYTKKKEEEFEQKKKKRMSAQQRQINKDNEMWETNRMVRSGVV
AKTNFDDDFDDDNVARVHLLVHNIVPPFLDGRIVFTKQPEPIVPIKDPTSDMAIVSRKGS
AAVRVHREQAERKKAQSKHWELAGTRLGNLLGVKKTDETSVFPSPGRHRRDEDLKKEQRF
SEVMSEKTEAVSEFAKRRSLTQQRQYLPIFAVRNELLSIIRDNNIIVIVGETGSGKTTQL
TQYLHEDGYTKYGMVGCTQPRRVAAMSVAKRVSEEMNVNLGEEVGYAIRFEDCTSEKTVI
KYMTDGILLRESLRESDLDNYSAIIMDEAHERSLNTDVLFGLLRNVVARRLDLKLIVTSA
TMDATKFATFFGNVPIFTIPGRTFPVDVLYAKNPVEDYVEAAVKQALQIHLQGQEGDLLI
FMPGQEDIEVTCELISERLDELDEAPPLAILPIYSQLPSDLQAKIFQKAPDGIRKCVVAT
NIAETSLTVDGIQFVIDSGYCKLKVFNPKIGMDALQIFPISQANANQRSGRAGRTGPGQA
YRLYTHRQYKDELLTTTVPEIQRTNLANVVLLLKSLGVVDLLSFHFMDPPPQDNIMNSMY
QLWVLGALDNTGALTPLGRSMVEFPLDPALSKMLIVSVDMGCSADVLTIVSMLSVPAIFF
RPKGREEDSDAAREKFMVPESDHLTYLNVYQQWKRNGYSSSWCTQHFIHVKAMRKVREVQ
QQLREIVEQQKMALVSCGSEWDIIRKCICSAYFHQAARLKGLGEYVNTRTGMPCHLHPTS
ALFGMGFTPDYIVYHELVMTSKEYMQCVTAVDGQWLAELGPMFYSIKDANKTRQERRQQA
EKDLTAMEEEMKRAEELLRARKEQAQAAATPASARQLIATPGRREPGTPSSTPRRSPKFG
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggcttctctggacttcgatgatgaccctggcctacatcgtcttgagggagcaagtggt
caggagcaaggtggccttgtgattatgaagaaaaaacctttaggcgatggtcatttgttc
agaaaacccgatgtacctaaggtctcattgcttggacttgataaacttgctgcgtcaaaa
agacagtccgatgtcactgacggcagtgcaacgcctaagcggtcgaaagtatcttcatac
aaaaatgatgacgacgatgaagttgaagaagagaaggacaataaaaatttttacagcagt
aatgagaggcactatcgaccacaaagaattgaaacaccctcacatcctggaggtgtcact
gcagaagccagagaaaggatgtcaaaacatcatcgtgatagggagcgtggtgtctatgtg
tcttcaaaagacagagacagagacagagaaagagattacaagagggatggagataaacat
cgtaatagagatagagacagagacagagacagagactacaggagaagtagagaaggtagt
gagaggaaaagtcatagaaggtatgatgaaaaaagttctaggagcggagatagatctgaa
cgaaaagattcagaacgaggctctagggactgggaggaaactccaaaccgaatatcaagg
gaagaaataaccacacctaagcttggaattaaagacacaccatcgagatcctcttgggat
gaagatgatgttactcctccaaagaaatctagctgggatcttccaacacccctaagacca
gatgaagaaaaagataactggagtgatcgtagctctgacagtcgtcattcaacacgggat
aaagactctgtgcgatctcagtttagtgatagaagatccaggacaaggaaacaaaatgat
tacacaccacaggctactccaacctacaagtacaatgaatggatgaacaacagaaagaaa
atactatacacacctaaggaccccttagataaagaaaaagagaacatagatgaaatgtcg
gaagaagaacgtttgcagtgggaagaagagcagaagcgcttagatcgtgagtggtacagc
atggatcagggctatgatgatacaaacaatccctttgctggcacatcggaggcctacacg
aagaagaaggaagaagagttcgaacagaaaaaaaagaaacgcatgagtgcccagcaaaga
cagatcaataaggataatgaaatgtgggagaccaatcgcatggtccggagtggcgttgtt
gcaaagaccaactttgatgatgattttgatgatgacaatgtggccagagtccacttgctt
gtccacaacattgttcctccctttctggatggtcggattgtcttcactaaacagccagaa
cccattgttccaattaaggatcccacgtcggacatggccatagtttcaagaaagggtagt
gcagcagtgcgggtgcaccgagagcaggcagagagaaaaaaggcccagtccaaacactgg
gagctagcaggaacacgcttgggaaacctgctaggtgtgaaaaagactgatgagacttca
gtatttccttcaccaggaagacacagaagagatgaagatttgaaaaaggagcaaaggttc
tctgaagtgatgtcagagaagacggaagctgtgagtgagtttgctaagcgtcggtcctta
actcagcagcgtcagtacctacctatctttgctgtcagaaatgagctactgagtattatc
agagacaacaacatcattgtaattgttggagagacgggttcaggaaaaactacgcagctt
acacagtatcttcatgaagatggctacaccaaatatgggatggtcggctgcacccagcct
cgtcgtgtggcagccatgtcagtggccaagcgtgtgtcagaggaaatgaatgtaaacctt
ggggaagaagttggctatgctattcgatttgaggattgtacctcagagaaaacagttatc
aagtacatgactgatggaatcttgctacgagagagtctgcgagagtctgatttagacaac
tatagtgccatcatcatggatgaggctcacgagcgttccctcaacacggatgtacttttt
ggcctgctcagaaatgttgttgcacgaaggctggaccttaagctgatcgtgacctcagca
accatggatgcaactaaatttgccacattctttggtaatgttcccattttcaccatcccc
ggtcggacgtttcctgttgatgtgctgtatgccaaaaacccagtggaggactacgtggag
gcagcagtcaaacaagctctacagattcacttgcaaggccaagaaggagacttgctgatt
ttcatgcctgggcaagaagacatcgaggttacatgtgaacttatatcagagcgcctagac
gaactggatgaggcgccaccattggctatacttcccatctactctcagcttcccagtgac
ttgcaggccaagatcttccagaaagctccagatggtatcagaaaatgtgtggtggccaca
aatattgcagaaacatctcttacagtggatggaatccagtttgtaattgattctggttac
tgtaaattgaaagttttcaatccaaaaattggtatggatgctttgcagatatttccaatt
agccaggcaaatgctaatcagcgatctggaagagcaggcaggacaggacctggtcaggct
tatcggctgtatacacaccgtcagtacaaagatgagttgctgacaacaacggtgcctgaa
atccaaagaacaaacttggcaaatgttgttctccttcttaaatcgcttggtgttgttgac
ctgttgtcatttcatttcatggatccacctccacaggacaacattatgaactcgatgtat
cagctttgggtattgggagccttagacaacactggagcattgacacctcttggacgcagc
atggttgagtttccgctggaccctgctctttccaaaatgcttatagtatctgtggatatg
ggctgcagcgcagatgtgctgacgattgtatcaatgctgtcagtgccagccatcttcttc
cggcccaagggacgggaggaggactcggacgcggctcgtgagaagttcatggtacccgag
tctgaccacctcacatatctcaatgtctaccagcagtggaagagaaacgggtattcgtcc
agctggtgcacgcaacacttcatccacgtcaaggccatgaggaaggtgcgtgaggtacaa
cagcagctgcgggagatcgtggagcagcagaagatggcgctggtgtcgtgcggcagcgag
tgggacatcattcgcaagtgcatctgctctgcctacttccaccaagccgccagactcaag
gggctgggggagtacgtgaacacccggacaggcatgccttgccacctgcacccgaccagc
gcactgtttggtatgggcttcaccccggactacatcgtctaccacgagctggtcatgacc
tccaaggaatacatgcagtgtgtgacagccgtggacggccagtggctggcagagctgggg
cctatgttctacagcatcaaggacgccaacaagacgcgccaggagcggcggcagcaggcg
gagaaggacctgacggccatggaggaggagatgaagagagcagaggagctgctaagggca
cgtaaggagcaggcacaggctgcagccacccccgcctccgctcgacagttaattgccaca
cctgggagacgcgagccaggtacaccgtcatcaacaccacgccgttcgccaaagtttgga
ctgtag
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integrated database retrieval system
