Pomacea canaliculata (golden apple snail): 112553988
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Entry
112553988 CDS
T05881
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcan03041
]
112553988
Enzymes [BR:
pcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112553988
Spliceosome [BR:
pcan03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112553988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
R3H
Helicase_C
DEAD
Ank_2
HA2_N
AAA_19
Ank
AAA_16
nSTAND3
AAA_22
ATPase
T2SSE
NPHP3_N
UvrD-helicase
AAA_7
ResIII
AAA_11
TsaE
PhoH
NACHT
FtsK_SpoIIIE
Sigma54_activat
Myosin_head
Flavi_DEAD
Ank_5
Motif
Other DBs
NCBI-GeneID:
112553988
NCBI-ProteinID:
XP_025077319
LinkDB
All DBs
Position
LG13:complement(246323..281726)
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AA seq
1462 aa
AA seq
DB search
MATREVVCNRPASNKSDSPSPAPSQNCSGRNSGQLSSNNIQAHLTMSASRGPRLDQAACI
GEEVKIGVHLAIERFRLDEKRKELEFPSSFTATERAYIHRLCQSLGLKSKSRGKGANRFL
TIYKKDGVTLGSWTASFQLARNSRHQIMSLLQRLPLTSRERADLQPRTHKMSVSEVTREF
NKTTTGRLNNGVPQVPPRRGESDLNSFRQTLPVFRMREEILAAINNNQVVLVSGETGSGK
TTQVTQIILDDCSARSQQCRILCTQPRRIAALSIADRVAAERGERIGQTVGYQKRVSPKT
LLTFCTNGVLLRTLMGRDAPLNTVTHVIVDEVHERDRFSDFLLACLKEALPRHPRLKIIL
MSAALNIQLFTAYFSGCPVVSVPGSLFHVEEFFLEDVLHWTNYSNKIMDKLKKEQRNVSQ
QQEQLNEWCASQLNCTDMVTSQMQDGCVSSRTTDFSSMEGHEEQEDLEPAVRDKMDELLS
SAWLSGSDEAFHQIFHLILCENVSVDYAHSSTTATALMVASGRGFVTVVEQLLSLGANMS
MHASNGWTALDWAQRFQQQQVVELLRAHIAVQETGSDAANGETSDDLQLVSPEDRELLTL
YQHSFDDDKVDVSLVVALVQRIHTAQPDGAILVFLPGYDDIVAVGNAINESSSFERCKVL
VLHSAMQSSEQKKVFNNFPRLRKIILSTNLAETSITVNDVVYVVDTGKVKEKTYDGLTST
SSLRSNWISKASALQRKGRAGRCRAGKCYHLFSRARYAHLMEYQQPEILRLPLHELCLHT
KLLSPATVSVAEFLGRCPQAPPFLIIRNAVTMLKQMDALDEWEELTELGHHLTDLPVEPR
LGKMVLHAVVLKCLDPILTIVCILAHKDPFMLPTXASHKRAASMARHKFAAGTFSDHMAL
LRAFQMWQKARTEGWERSFCEKNFLSAACMEMVVGMRAQLLGQLRASGFVRARGGGDIRD
LNTNSENWAVVKAALCAGMYPNLLYVDRKKNSLITQHESNVRFHQSSVLSVMPSAASISS
SCHKQALHSLPCDWLIYEEITRTERLALVKCCTLLSPITVVIFAGPSKLPPDAMKEGENI
QDGDELVDGRGEESDSEDEDKTGQRKSQLQLDSWLTFSVDAEVGSIYGIQLRQKWHALFL
RRMRAPSKPSSQSDEEVVRAVVNVLTNEEQTVGLQQPAGIGQRPRPMSAESIMSGASSAY
TDYTEDNTERTSSRYGPRRIPATPPRRPFQICRNTLLDDADDITPQSPSSTPCPSPSPQS
ASPARSGGGSSSSGSIDSSIDPGVVSSAPCRYFVMKCNNQRNLDISQSKGIWATSPANQA
KMNRAFRDGKTVYLIFSIQGSGHFQGYAKMLTEIGRHKSPDFASPGLTGTFAVEWIKRAN
IPFMSTHHLYNTWNENRKVQVSRDGQELEPGVGEALVKLWERYPTVTPKNASPSAVVTKT
VVKKSHSSARPSAATSRVGNIR
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcgagaagtcgtctgcaacagacctgcttcaaataaatcagattcgccatca
cctgcaccttcgcagaattgcagtggcaggaactcaggacagctttccagcaataatatt
caggcacacctgacaatgtctgcaagcagaggacctcgtctcgatcaagcagcatgcatt
ggcgaagaggttaaaattggggtccatcttgcaatcgaacgctttcgcttagatgagaaa
agaaaagagctggagtttccctcctcattcacagccacagagcgtgcatatatacaccgt
ctatgccagagcttgggcctgaagtccaagagcagagggaaaggtgctaacagatttctg
accatctacaaaaaggatggtgtgacgttaggcagttggacagcaagttttcagctagca
cgaaactcacggcaccaaatcatgtcactgctgcagcgtctacctttgacatcaagggaa
cgagctgaccttcagccacgtacacacaagatgtcagtcagtgaagtcacacgggaattc
aacaagacaacaacaggcagactaaataatggtgtgcctcaagtacctcctcgtcgtgga
gaatcagatttaaatagtttccgccagacattacctgtatttcgcatgcgggaggagatt
ctggcagcaatcaacaataatcaagttgttttggtgtctggtgaaacagggtctggaaaa
actacacaggtgacgcagataattctagatgattgcagtgcacgtagccagcagtgtcgt
atcttgtgcacacagccacgtcgcattgcagctctgtccattgcagacagagtggcggca
gagcgaggggagagaattggccagacagttggctatcaaaaacgagtgtccccaaaaacg
ttgctgaccttttgtaccaatggtgtattactgcgcaccttgatgggcagagatgctcct
cttaacactgtcactcatgtcattgtagatgaagttcatgaacgtgaccggttcagtgat
ttcctgctggcatgtttgaaagaggccttaccacgacatccacgcctaaaaatcatcctt
atgagtgctgctctcaatattcagctgtttacagcttacttcagtggttgccctgttgtg
tcggtacctggaagcctgtttcatgtggaggaattctttctggaagacgtgctgcactgg
acaaactacagcaacaaaatcatggacaagctgaaaaaagaacagagaaatgtgtcacaa
cagcaggagcaattaaatgagtggtgtgcaagtcagttgaactgcactgacatggtgaca
tcacagatgcaggatggctgtgtcagcagtagaactacagactttagcagcatggagggt
catgaggaacaggaggacctagaaccagctgtacgtgacaagatggatgagttactttcc
tctgcctggctatctggtagcgatgaagccttccaccagatcttccatttaattctctgt
gaaaatgtgtctgtggactatgctcattcatctaccacagccacagctctgatggtggca
tcgggtcgtggctttgtaactgtggtggaacaattgctgagcctgggagccaacatgtcc
atgcatgcctcaaatggatggactgccttggactgggctcagcgttttcagcaacagcaa
gttgtggagctactgcgggctcatattgctgtccaggagacagggagtgatgcagccaat
ggagaaacatcagatgatctgcagctagtgtctccagaagatcgagaactgcttaccttg
tatcagcacagttttgatgatgacaaagtggatgttagcttggttgttgctcttgttcaa
agaatacacacagcgcagccagatggtgctattcttgtcttcctgccaggatatgatgac
attgttgcagtgggaaatgccattaatgagtcatccagttttgagaggtgcaaagtattg
gtgttacattcagcaatgcagtcatctgaacagaagaaggttttcaacaactttcctcgc
ctgagaaaaattattctgtctacaaatctagcagaaacaagcatcacggtcaatgatgtg
gtctatgtggttgatactgggaaagtgaaagagaaaacctatgatggtctgacatcaaca
tccagcctaagaagcaactggatctctaaagccagtgccctccaacgaaagggcagggca
ggaagatgccgggcaggtaaatgctatcacctgttcagccgtgcaaggtatgcccatctc
atggaataccagcagccagagattctgcgactgccattacatgagctgtgcctacacacc
aagctactatcaccagccactgtcagcgttgcagagtttctgggtcgctgtcctcaggct
ccaccattccttatcattcgcaatgcagttacaatgctgaagcaaatggatgcattagat
gaatgggaggaactgacagagttaggtcaccacctaactgatttaccagtggaaccacgg
ctagggaagatggttttacacgcagttgtgctaaagtgtcttgaccccatcttgactatt
gtctgcatactggctcataaagaccccttcatgcttcccactngtgcctctcacaaaaga
gcagccagcatggcacggcacaagtttgccgcagggaccttcagcgaccacatggccttg
cttagggcattccagatgtggcagaaagccagaacagaaggttgggaacgatctttttgt
gagaagaacttcctgtctgcagcctgcatggagatggtggttggcatgagggcacagtta
ctgggacagctacgagccagtgggtttgtgcgtgcacgagggggaggagatattagagat
ctcaacactaactctgagaactgggctgtggtcaaggcagcactgtgtgctggcatgtac
cctaatctactctatgttgaccgcaagaaaaattccttgatcacacaacacgagtccaat
gtacgttttcatcagagctcagtactgagcgtgatgccctctgccgccagtattagcagc
tcctgtcacaagcaggctctccacagccttccttgtgactggctgatctatgaggaaatc
acacgtacagagcgcctggcactggttaagtgctgcactctcctctcacccattacagtg
gtcatttttgctggcccctccaaacttccacctgatgctatgaaggaaggagagaacatt
caagatggggatgaattggttgatggccgaggtgaggagagtgatagtgaagatgaagac
aagactggacaacgaaagtctcagttgcaactagacagctggctgaccttcagtgtggat
gctgaggtaggcagcatatatgggattcagctacgtcagaagtggcatgctctcttcctt
cgtaggatgcgggctccatccaaaccatcctcacaaagtgatgaggaggtagtgcgagca
gtcgtcaatgtcctgaccaatgaggagcaaactgtagggctgcagcaaccagctggtatt
ggacaaagaccacgacccatgtcagcagaatcaatcatgtcaggggccagcagtgcttat
acagattacacagaggataacacagagaggacttcatctcgctatggtcctcgtcgtatc
ccagcaacaccacctcggcgaccttttcagatatgcagaaacactctactagatgatgct
gatgacatcactccacaaagtccttcttccacaccttgtccatccccatccccgcagtct
gcatcgccagcacgcagtggtggtggtagcagcagcagtggcagcattgacagcagtatt
gaccctggtgttgtcagcagtgccccctgtcgctactttgtcatgaaatgcaataatcaa
cgcaatttagatatttctcagagcaagggaatctgggctacgtcccctgcaaaccaagcc
aaaatgaatcgtgcatttcgggatgggaagactgtataccttatcttctccattcaaggc
agtggccacttccaggggtatgccaaaatgttgacagaaattggacgtcacaagtctcca
gactttgcttccccaggtcttactggtacatttgctgttgaatggatcaagagagccaat
attccctttatgtcaacacatcacctgtacaacacctggaatgagaaccgtaaagtccag
gtcagcagggatgggcaggaactagaaccaggtgtgggagaagcacttgtcaagctgtgg
gagcgctaccctaccgtaacacccaaaaatgcatctccatcagctgttgtgacaaagaca
gttgtgaaaaaatctcattcctcagctagaccctcagcagcaacatcaagagttggaaat
atcaggtga
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integrated database retrieval system
