Pomacea canaliculata (golden apple snail): 112554189
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Entry
112554189 CDS
T05881
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03013
Nucleocytoplasmic transport
pcan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112554189
03015 mRNA surveillance pathway
112554189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcan03019
]
112554189
Enzymes [BR:
pcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112554189
5.6.2.5 RNA 5'-3' helicase
112554189
Messenger RNA biogenesis [BR:
pcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112554189
mRNA cycle factors
Common to processing body (P body) and stress granule
112554189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
Helicase_RecD
UvrD-helicase
nSTAND3
ATPase
SRP54
AAA_16
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
112554189
NCBI-ProteinID:
XP_025077617
LinkDB
All DBs
Position
LG13:830798..852477
Genome browser
AA seq
1111 aa
AA seq
DB search
MSVDTYGPSSQTLTFLETEDGTDLLGADTQGSEFEFTDFTLPSQTQSQTQASQIELQSQS
QINGPDQLVHNGIDLSIKAINQGMGELNFEEEEEDQFYMKDLPKHACAYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADTVVVLLCRHPCANLSSLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQDQMRSRQ
ISAQQINKLEELWKENPDAKLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNMVVRWDVGLNKKRIAYFHLPKANDEMKLMHGDELRIRYVGELHKPWSG
VGHVIKIPDNYSDEVAIELKSNAGVPVECTHNFVVDFVWKSTSFDRMQAAMKTFAVDETS
VWGYIYHKLLGHEVEDVVLKCSLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLVKQNNGPVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPV
SFLALHNQIRSMDSVPELSKLQQLKDETGELSSTDEKRYRALKKQCEKELLQAADVICCT
CVGAGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAERLRKNLD
FPWPQPDKPMFFYCTNGQEEIASSGTSYLNRTEAANTEKLATRFLRAGVKPDQIGIITPY
EGQRAYQVQYMQYSGALNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLTNLKESLIQFSKP
RKLVNSVNPGGRFMSNTMFDARELLVPGSVYDRGVAYREPVVHTHDQLNMIGPERAYTRT
SMNLPVPVNMFLPPVAQPFPHLQHLPTDTGIQKGIHGMHGNSWGSGRRQKPPRYSKHQQN
SHNTGVSQHSQPSQEVSQSFSQGPLTQGLSMSQAFPMSQTGMSGLSQAELSQDSFLADDF
KSQMDGMLSQDSTYQGDRHFYASQLSQGPFN
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacacgtacggtccgagctcacaaacgctcacgtttttagaaacagaagat
gggaccgaccttctgggtgcagacactcaaggatccgagtttgaatttactgacttcact
cttccgtctcaaacacagtcacaaacccaggcgtctcagatcgaactccaaagtcaaagt
cagataaatggaccagaccagctggtacacaatggaattgacctttccatcaaggccatc
aaccagggaatgggtgagcttaacttcgaagaagaggaggaggaccagttctatatgaag
gatttgcccaaacatgcgtgcgcctactgcggcatccatgacccagcatgtgttgtgtac
tgtaatacttccaagaaatggttctgcaatggtcgtggcaatacttcagggagccatatc
atcaaccatctggtgcgggccaaggctaaggaggtgacactgcacaaggacggccctttg
ggagagactgtgcttgaatgttacaactgtggatgtcgcaatgtcttcctactgggcttt
atccctgcaaaggcagacacagtggttgtgcttctgtgtcgtcacccatgcgccaacttg
tccagcttgaaagatatgaattgggatccaagtcagtggcaaccactcatacaagaccgg
cagtttttgtcatggctggtgaaggtgcccagtgaccaagaccagatgcgtagtcgacag
atcagtgctcagcagataaataaactagaagagctctggaaggaaaacccagatgccaag
ttagaggacctggagaaaccaggtgttgacgaagaaccccagcaagtcttgctcaggtat
gatgatgcataccaataccaaaacatctttggcccccttgtgaaattggaggctgattat
gacaagaaacttaaagaatcacagactcaggataacatggtcgttcgctgggatgttggc
ctcaacaaaaagcgcattgcatactttcatctgcccaaggcaaatgatgagatgaaactg
atgcatggagatgagctaaggatccgttacgtaggggaacttcacaagccatggtcaggt
gttggtcatgtcatcaagatcccagacaactacagtgatgaggtggccattgagctgaag
agcaatgctggtgtacctgttgaatgtacccataacttcgtcgttgattttgtgtggaaa
tccacctcctttgacaggatgcaggcagccatgaagacctttgctgtggacgaaacatca
gtgtggggctacatctaccataaactgctgggtcatgaggttgaggatgttgtgttaaaa
tgctccctgcctaaacgcttctcagcacctggtctcccagagttgaatcattctcaggtg
tatgctgtcaaaacagtcctgcagcgcccattgagcctcatacagggacctccaggaact
gggaagaccgttacgtctgctaccattgtttaccacctggtgaaacagaataatggtcct
gtgcttgtctgcgccccctccaacattgctgtggaccagcttactgagaagatccacaaa
acaggcctgaaggtggtgaggctttgtgctaagagccgcgaggcaatagactccccagtg
tctttcctggcattgcacaaccaaatccgtagcatggacagtgttcctgagctgtcaaag
ctgcagcagctgaaagatgagactggagagttatcatccacagatgaaaagcgttaccgc
gccttaaagaagcagtgtgaaaaagagctgctgcaggcagctgatgttatctgctgcact
tgtgtaggagcaggggatcctcgccttgccaaaatgcagttccgctctgtgcttatcgat
gaaagtacacaggcaaccgaacctgagtgtatgattcctgtcgttcttgggtgtcgccag
ctaatcctggtgggtgaccattgtcagctgggcccagtagtaatgtgcaagaaagcagcg
agggctggattgtctcagtcactgtttgaacgtctggtggtgctgggtattcgtcccatt
cgcctacaggtgcaataccgcatgcatccggcactgtctgccttcccatccaacatcttt
tatgagggctcacttcaaaatggagtcactgcagctgaacgtttacgcaaaaatctggat
tttccttggccacaaccggacaagccaatgttcttctactgcacaaacgggcaggaagaa
atagccagctctggaacctcctatctgaacaggacagaggcagccaacacagaaaagctg
gctacccgtttcttgagggcaggtgtcaagccagaccagattggcatcataacaccctat
gaaggtcagcgtgcataccaggttcagtacatgcagtactctggagcactcaacaaaaaa
ctttatcaggagatagaggtggccagtgtggatgctttccaagggcgggagaaagacttt
attatcctttcttgtgttcgatctaatgaacaccaaggtattggtttcctaaatgatcca
cggcgcctcaatgttgcccttactagggccagatatggaatcatcattgttggaaaccca
aaagttctgtctaagcaacctctatggaaccatctgctgacatactataaggagcagaaa
tgtcttgtggaagggcctctcaccaatcttaaagaaagcctcattcagttcagcaaacca
cgcaagctggtcaactctgtcaatccgggtggtcgtttcatgagcaacaccatgtttgat
gcccgtgagttgttggtgcctggcagtgtgtatgaccggggtgtggcctacagggaacct
gtggtccatactcatgaccaactgaacatgattgggccagagcgtgcctacacacgtact
tccatgaacttgcctgtgcctgtcaacatgtttttgcctcctgtggcccagccctttcca
catcttcagcatttgccaacagatactgggattcagaagggcattcatggtatgcatggc
aacagttggggctctggccgtcgtcagaaacccccacgctacagcaagcaccagcagaac
tcccacaacacgggtgtctcacagcacagccagccaagccaggaagtttcccagtcattc
tcccagggtcctctaacccagggcctgtccatgtcacaggcgttcccaatgagtcagact
ggcatgagtggactctcgcaggcagagctgtctcaggacagcttcctggctgatgacttc
aagtctcagatggatggcatgctgtcacaggactccacctaccagggagaccggcacttc
tatgcctcccaactctcacagggtcccttcaactag
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integrated database retrieval system
