Pomacea canaliculata (golden apple snail): 112555655
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Entry
112555655 CDS
T05881
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan04512
ECM-receptor interaction
pcan04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112555655
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112555655
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcan04147
]
112555655
00536 Glycosaminoglycan binding proteins [BR:
pcan00536
]
112555655
Exosome [BR:
pcan04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112555655
Glycosaminoglycan binding proteins [BR:
pcan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112555655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112555655
NCBI-ProteinID:
XP_025079882
LinkDB
All DBs
Position
LG14:complement(17932961..17962709)
Genome browser
AA seq
1768 aa
AA seq
DB search
MKPREVTSLATLLAVALSVFVDSVSSAACEGCTSNICICAGEKGEQGAPGLPGLQGPQGL
PGFLGPEGPVGPFGLKGDQGEPGAFGPKGYRGDTGLPGFTGVAGTPGQPGLEGPVGESGY
PGCNGTKGLSGVSGLPGVPGEAGRPGRDGLPGPKGEPGELTDVAIGQKGEPGDYGMPGID
GLGGIPGQRGDKGPTGEDGIPGLDGIPGQKGMQGDVGDPGQGIPGEKGMKGDVGPPGTAT
TEQGPENITLAGEKGAKGVQGMKGEQGDEGPTGEEGSAGDVGPVGVKGPQGMDGPSGRRG
KRGKEGPPGPYGQKGMVGEKGFAGQPGLDGIKGMAGDSGYPGRAGPQGPPGPPGEFIPEL
DEGTEGPPGRAGPPGPKGARGLTGDDGEVGREGPVGFPGLPGQPGRPGEVGIPGDSQKGD
RGEPGLPGVDGVDGLSGFPGLAGDPGEKGLQGETVRGPAGAPGLRGGDGLPGLPGPPGDF
GSIGERGLPGTPVRFPGPIGAPGLPGDRGDTGQPGEHGLPGLPGVKGLAGDDCGICPDGI
PGARGDPGDPGLPGQTGFPGPGGFPGPKGEPGEFGRPGEEGRVGPPGFAGRPGPDGLPGP
KGFPGAILPPPSLELFRGPKGAKGTAGFPGIPGTDGSQGDTGIRGMPGLFGLPGLKGDLG
QPGDDGLDGLPGLPGELGRKGLAGQSTIGALGRKGQGGVPGLEGFPGPKGQKGQPGEAFL
IQLDKGDQGESGLPGIDGLPGRDGAPGTRGPRGEDGLPGLPGEKGMVGDPGLPGLPGTPG
FPGPKGYPGPVGDPGFPGVDGLKGESGEDGPPGAPGRPGFPGRKGETPRTAPAGVPGEPG
PSGEYGFPGTPGTPGGSGQPGLPGFVGRKGEPGYEGVPGLPGEPGRPGDAGQPGLPGLAG
FPGEQGRSGQPGLPGIRGDAGLPGLPGEPGRPGDSGRPGLPGPSGENGRDGAIGRQGLAG
LPGLPGIKGERGAMGREGPRGPAGLDGLEGLPGGIGEVGSPGDLGIPGIPGESGPPGLPG
ESGLPGLPGFKGRAGLPGPTGRPGLLGDDGQPGLVGFPGEDGLPGLPGEKGNRGISIPGE
PGRPGQPGLPGLRGLDGLPGPKGQGGVMGIPGLPGLPGPRGRNGTAGEDGRIGQPGFKGM
RGDDGPPGVPGEIGEIGDDGRSGRPGPPGAPGDPGLSGRPGEPGARGPDGDRGRDGRPAL
PGLPGRRGDVGPDGTPGIPGEPGRRGEDGLPGLPGERGLSGDPGRPGRDGFPGEFGRTGP
RGPVGPPGPDGAPAPPGRPGPPGDDGISGLPGIPGERGSMGEDGLNGLPGIKGAKGEPNQ
LVRGPKGFSGEPGLPGLIGRRGAKGIDGMPGLPGLPGMKGVSGLPGESGQPGLDGVEGLP
GLDGDPGFSGLPGRQGLAGEDGLRGLPGQKGLIGEIGYPGPKGSTGRKGVKGATGPRTPF
NNFELLKGSPGDKGFPGLRGLPGDPGLPGTDGFPGFLGRKGEAGEPGFYGLVGESGRPGL
AGGRGRSGTPGFPGEPGRVGVPGVPGAPGTGPGIFFTRHSQTTSPPDCPIGTTKMWDGYS
LLYVVGNGRAHGQDLGDAGSCLRRFHTMPFMFCNINNVCNFASRSDYSYWLSTPEPMTPM
MDPVSGDRIRPYISRCAVCDTPSPIIAVHSQTMVIPDCPQGWSGVWIGWSFVLSTGSGTS
GTGQGLQSPGSCLEDFRTSPFIECHGRGTCNYYATSASFWMTTIERADQFRRPLSETLKA
GDLRRRISRCQVCIKDFGTGPAFFRMVK
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgagagaagtaacatcgctagcaacactacttgctgttgctctctctgtgttc
gtcgattctgtctcgtcagcggcgtgcgaaggatgcacatcaaatatatgcatatgcgca
ggtgaaaagggggaacagggtgctcctggtctgcccggtctccaaggtcctcagggtcta
ccaggtttcctggggcctgaaggtcctgttggtccatttggactgaaaggtgatcaggga
gagccaggggcctttgggcccaaaggatacagaggagacactggcttacctgggtttaca
ggtgttgctggaactcctggtcaaccaggacttgaaggaccagtaggagaatctggttac
ccaggatgtaatggtacaaagggtttgtctggagtgagtggattaccaggagtgccagga
gaggcaggacgacctggcagagatggtttacctggtcccaagggtgaacctggtgaactt
acagatgttgctataggacaaaagggagaaccaggtgattatggaatgccaggaattgat
ggtcttggaggaattccaggacagaggggagataaaggtcctacaggagaggatggtatc
ccgggtctggatggaatcccagggcaaaagggtatgcaaggtgatgtcggtgatccaggt
caagggatccctggtgaaaagggaatgaaaggtgatgtaggtcctcctggtacagcaaca
actgagcaaggtccagaaaacataacacttgctggagaaaaaggtgcaaagggagtacaa
ggaatgaagggggagcaaggtgatgagggtccgacaggcgaggaaggatctgcgggagat
gtaggtccagttggtgtcaagggacctcaaggaatggatggtccatcaggtcgcagaggt
aaacgagggaaagaaggtccacccggaccatacggacagaaaggaatggtgggagagaaa
ggatttgctggtcagccaggtcttgatgggattaagggtatggctggggattctggttac
cctggacgtgcaggtcctcaaggtcctcctggcccaccaggagagtttattccagaacta
gatgaaggtacagagggaccaccaggcagggctggtcctcctggtcctaaaggtgcacga
ggtctcacaggtgatgatggagaggtaggtcgggaaggcccagtaggttttcctggacta
cctggtcaacctggtcggcctggggaggtcggtattcctggagattcccagaaaggcgac
agaggtgaaccaggccttcctggtgttgatggagttgatggcttatctggatttcctggg
ttggctggtgatcctggagaaaaagggttgcaaggagaaactgttcggggcccagctggt
gctcctggtttacgtggaggagatgggctaccaggcttacctggtccacctggtgatttt
ggtagcattggtgagagaggtttacctggcacacctgttagatttcctggtcctattggt
gcacctggtttgccaggtgacagaggagacacaggacagccaggtgaacatggactacct
ggtctacctggagtcaaaggcttagctggtgatgactgtggtatctgccctgatggaatt
cctggagcacgtggtgatcctggtgaccctggacttccaggacagactgggtttcctgga
cctggtggctttcctggacccaaaggggagcctggtgaatttggccgaccaggagaggaa
ggccgtgttggaccaccaggttttgcaggtcgacctggacctgatggtctgcctggtcct
aagggcttcccaggggctattcttccgccacccagtcttgagttattcagaggacccaaa
ggagcgaagggcactgcaggatttccaggaataccaggtacagatggttcacagggtgac
acaggaatccgtggtatgccaggcttgtttgggcttccaggattaaagggagatttggga
caaccaggtgatgatggactggatgggttacctggtcttccgggtgaacttggtcgcaaa
ggtttagcaggacagtctaccataggtgccttaggtcgcaaaggccagggaggtgtacct
gggctggagggctttccaggaccaaaaggacaaaaaggtcaaccaggagaggcattcctc
atacaacttgataaaggtgaccagggagaatctgggctacctggcattgatggtttacct
ggcagagatggtgctccaggtactcgtggtccgcgaggagaggatggactgcctggtctc
ccaggtgaaaaaggaatggtaggagatccagggttacctggattacctggaacacctggc
tttcctggtcccaaaggctaccctggtcctgttggagatccagggtttcctggagttgat
ggcctgaaaggagaatcaggagaagatggcccacctggtgcaccaggaagacctgggttt
cctggacgcaaaggtgaaacacctcgcactgcccctgcaggtgtacctggagagcctggt
ccctctggagagtatggattccctggtacacctggcacacctggaggaagtggtcaacca
ggattgcctggttttgtagggaggaagggagaacctggctatgaaggtgtgcccggcctg
cccggtgaacctggtcgcccaggagacgctggtcagccaggtctacctggtctagcaggt
tttccaggagaacaaggaaggtcaggacaaccgggtcttcctggcattcgtggtgatgct
ggactgcctggcttgcctggagaaccaggacgtccaggtgactcaggaagaccaggttta
ccaggtccctcaggcgaaaatggacgggatggtgccataggaagacagggattggctggt
ttacctggtttaccaggtattaaaggagagcgcggggcaatgggccgcgagggtcctcgt
ggtcctgctggtcttgatggacttgaagggctacctggcggaataggtgaagtaggaagc
ccaggcgatttgggtattccagggatacctggagaatcaggaccgcccggtttacctgga
gaatcaggtctcccaggattgccaggatttaagggaagagcggggcttccaggccctact
ggtcgtcctggactacttggagatgatggacaacctggccttgttggctttccaggagaa
gacggacttccaggtctacctggagaaaagggcaaccgtgggatatctatacctggtgaa
ccagggcgtcccggccagcctgggctgcctggactgcgagggttagatggattgccagga
ccaaaggggcagggcggcgttatgggaataccaggacttcccggcttgccagggccccgt
ggtcgtaacggcacagcaggtgaggatggccgcattgggcagccgggtttcaagggaatg
agaggagatgatggacctcccggcgttcctggcgaaataggcgaaattggtgatgatggt
cgtagcggtcgacccgggcctcctggagctccaggtgatccgggactctccggtcgacca
ggggagccaggcgcccgtggtcctgatggagacaggggccgagacggcaggccggcacta
cctggcttgccaggtcgtcgtggagacgtgggtcccgatggaaccccagggatacctggc
gagcctggtagaaggggtgaggacggtctaccaggattacccggagaacgaggcctatct
ggagacccgggtagacctggcagagatggtttccctggagagtttgggcgcactggaccg
cgaggccctgtgggacctccaggaccagacggagcacctgcacctcctgggcgccctgga
ccccctggagatgatggcatctctggcttgcctggaatacctggagaacggggatcaatg
ggagaggatggactaaacggtttacccggcataaagggagcaaaaggagaacccaaccaa
cttgtccgggggccgaagggcttttctggagagcctggcctgcctggacttataggccgc
cgcggagctaaggggattgacggaatgcctggcttacctggtcttcctggaatgaaaggt
gttagtggtcttcctggagaatctggacaacctggacttgatggtgtggaaggcttgcca
gggctagatggagacccaggattttctggacttccgggaaggcaaggtttagcaggggaa
gatggcttacgaggacttccaggacaaaagggcctgattggagaaattgggtatcctggt
cccaaagggtctacgggtcggaagggtgtaaagggtgcgacaggaccaagaacgcctttc
aacaatttcgagcttcttaaaggcagccctggtgacaaaggctttccaggacttcgtgga
ttacctggtgatcctggactaccaggtactgatggcttcccagggttccttggacggaaa
ggagaagccggtgagcccggtttctatggccttgtaggagagtcgggcaggccgggactt
gccggcggacgagggagaagcggcacacctggttttcctggggaacctggtcgagtggga
gtaccaggtgttcctggtgcacctggcactgggcccggcatattctttacaagacacagt
cagactacttcaccacccgactgccccatcggcaccaccaagatgtgggacgggtactcc
ctcctctacgtcgttggcaacggacgcgctcacggtcaagatctgggtgatgcgggtagc
tgtctgcgccgcttccatacgatgccgtttatgttctgcaacatcaacaacgtgtgcaat
ttcgcttcccgctccgattacagttactggctgtccacgccagagccaatgactcccatg
atggacccggtttccggtgacaggattcgcccgtacatcagccgttgtgctgtctgtgat
acaccctcaccgatcatcgcagtgcacagccagacgatggtgattccagactgcccacag
ggatggagtggtgtgtggataggctggagcttcgtgctgagcaccggctctggcaccagc
ggcacaggacaaggtctgcaatccccaggctcctgtctggaagacttcagaacatccccg
ttcattgagtgtcatgggcgaggcacatgcaactactatgccacgtcggcaagcttctgg
atgacaaccatcgaaagagccgaccagttcagacgacctttgtcagaaactctcaaagcg
ggcgatctgaggagacgtatcagcaggtgtcaggtgtgcatcaaagacttcggaacaggc
ccagcgttctttaggatggtgaagtga
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