Pomacea canaliculata (golden apple snail): 112555697
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Entry
112555697 CDS
T05881
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03020
RNA polymerase
pcan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112555697
09124 Replication and repair
03420 Nucleotide excision repair
112555697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcan03021
]
112555697
03400 DNA repair and recombination proteins [BR:
pcan03400
]
112555697
Enzymes [BR:
pcan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112555697
Transcription machinery [BR:
pcan03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112555697
DNA repair and recombination proteins [BR:
pcan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112555697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
112555697
NCBI-ProteinID:
XP_025079973
LinkDB
All DBs
Position
LG14:5243119..5258710
Genome browser
AA seq
1958 aa
AA seq
DB search
MAFTGDSNAPLREVKRVQFGILSPDEIRRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGV
TDRISRCQTCAGNMTECPGHFGHIELAKPVFHVAFLTKIVKLLRCVCFFCSKLLADPESP
KMKDILSKSRGYPKKRLAHVYDLCKSRRACDGGDEMEKKNKDATEEQEDSVPKGHGGCGR
YQPTIRRNGLELVAEWKPDKVNEESQERKIILSAERVLEIFKRISDEECTCLGMDSKFAR
PDWMILTVLPVPPLPVRPAVVMFGSARNQDDLTHKLADIVKANNQLHRNEQNGAAAHIIF
EDTKMLQYHCATLVDNEIPGLPKAVQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSGR
TVITPDPNLRVDQVGVPRSIAQNLTFPELVTPFNIDRMQEAVRRGANQYPGAKYIIRDNG
ERIDLRFHPKSSDLHLQIGYKVERHMQDNDVVIFNRQPTLHKMSMMCHRVKVLPWSTFRL
NLSVTTPYNADFDGDEMNLHLPQSLETRAEIMNLAAVPRMIVTPQANRPVMGIVQDTLTA
VRKMTKRDVFLDRAQVMHLLMFLPTWDGRMPQPAILKPQPLWTGKQIFSLVIPGRVNVIR
THATHPDDEDSGPYKWISPGDTKVLIEDGQLISGILCKKTLGASSGSLLHIVFMEMGHEI
AGELYGNIQTVVNNWLLVEGHSIGIGDTIADQQTYHDIQETIRKAKGDVIEVIEKAHNDE
LEPTPGNTLRQTFENQVNKILNDARDKTGSTAQKSLSEFNNFKAMVVAGSKGSKINISQV
IACVGQQNVEGKRIPFGFRYRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR
EGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLIQLRYGEDGLDACHVEFQ
SLPMFKPSNKVFERQFRFDATNERAMKRCLKEEVIKDLMGNATTLAELEREWDQLKDDRI
SVRQVFSNGDAKIVLPCNLQRMIWNAQKIFRIDKRKPSDLHPVKVVEGVRELCKRLMVVG
GEDRISKQANENATLLMKSLIRSTLCSKRVAEEHRLSAEAFEWLIGEVETRFQQAQAHPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLAVYLL
GQAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPMNTVIAEDQEWVSIYYEMPDFDA
SRISPWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNS
EENKLQEEEEVVDKMEDDVFLRCIEANLLSDMTLQGIEAISKVYMHLPSTDDKKRISITE
EGEFKAVAEWILETDGSSLMKVLSERDIDPVRTYTNDIVEVFATLGIEAVRKAIEREMGF
VISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAAA
HAEVDPMKGVSENIMLGQLAKIGTGCFDLLLDAEKCKFGMEIPTNVGGGMMAGAGTGMFF
GAAXSPSSALSPQMTPWNATPAYASAWSPGVGSGMTPGAAGFSPSAASESGYSPGYSPAW
SPQPGSPSSPISPYIPSPXGAMSPSYSPASPSYIPSSPAMTPQSPGYSPTSPSYSPSSPG
YSPTSPKYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPSSPNYSPSSPSYSPTSPSYSPTSPSYSPASPSYSPSSPSYSPASPSYSPSS
PSYSPSSPKYSPSSPNYSPTSPSYSPSSPQYSPSSPKYSPTSPSYSPSSPKYSPTSPTYS
PTSPRYSPASPEYSPSSPQYSPSSPQYSPASPAYSPGSKYSPASPTYSPSSPKYSPTSPT
YTPTSPHYSPSSPTYTPTTPKYSPTTPTYAEEKKKKKK
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcacaggagactctaacgcgcctctgcgcgaagttaaacgggtacagtttggt
atactgagcccagacgaaattcggagaatgtcagtaacagaaggaggaatcaagtaccca
gaaacgacagaaggtggtcgcccaaagctaggagggcttatggatcctcgccagggtgtc
accgatcgaatatctcgatgtcagacatgtgctggaaacatgacagagtgtccaggtcac
tttggccatattgagcttgccaaacccgtctttcatgtggcctttttgaccaaaattgtc
aaacttttgcgttgtgtctgcttcttctgctccaaattacttgcagacccagagtcaccc
aaaatgaaagacatcttgtctaaatccagaggctaccctaagaaaagactagctcatgta
tatgatctgtgcaaatcccgaagagcttgcgatgggggagatgaaatggagaagaagaac
aaagatgcaacagaagagcaggaggactctgttcctaagggccacggaggctgtggtcgt
taccagcctaccatacgacgcaatggacttgagctagttgctgagtggaagcctgacaaa
gtgaatgaagagtcacaagagaggaaaattatcctttctgcagagcgtgttttggaaatt
ttcaaacgcatatctgatgaagagtgcacgtgcctgggcatggattcaaaatttgctcgt
cctgactggatgattttgactgttttaccagttcctccactgcctgtgaggcctgctgtg
gtcatgtttggatcagcaagaaatcaggatgatctaacacacaaactggcagacattgtg
aaagccaacaaccagctgcatcgcaatgaacaaaatggggcagcagctcacattatattt
gaagacaccaaaatgctgcagtatcactgtgctacactggtggacaatgaaatacctggt
ctgccaaaagctgtgcagaaatcaggtcgtcctttaaagtcaataaaacaacgactgaag
ggcaaagaaggtcgggtgcgtggtaatttgatgggcaagcgtgtggacttttcaggccga
acagtcattactcctgatccaaaccttcgtgttgatcaggttggagtgccccgctcaatt
gcccagaacctaacatttcctgaattagtgacacctttcaacattgacagaatgcaggag
gctgttagaagaggagctaaccagtacccaggtgccaaatatattatccgtgacaatgga
gagagaattgacctccgctttcatccaaaatctagtgaccttcatctccaaattggctac
aaggttgagcgccacatgcaagacaatgatgttgtcatcttcaatcgccagcccacgcta
cacaaaatgtctatgatgtgtcatcgtgtgaaagttctgccctggtcaacattcagattg
aaccttagtgtaactacaccctacaatgcagactttgatggggatgagatgaatcttcac
ctacctcagtcattagagacacgggccgagatcatgaacttggctgctgttcccaggatg
attgtcactcctcaggctaaccgacccgtcatgggtattgtgcaggacacgcttactgct
gtgcgcaagatgactaaacgagatgtgtttctagacagggcacaggtcatgcacctcctt
atgtttctgcctacctgggatggtcgcatgccgcagccagcaattttgaaacctcagccg
ttgtggacaggtaaacagatcttctctttggtcattcctgggcgtgtcaatgtcatccgt
acccatgctacacacccagatgatgaagattctggtccttacaaatggatatcacctgga
gacactaaggtgctaattgaagatggacagctcatcagcggtattttgtgtaagaagaca
cttggtgcttcctcaggctctttgctgcacattgtcttcatggaaatgggacatgagatt
gctggagaactgtatggcaacatccagactgttgtcaacaactggcttctcgttgagggt
cacagcattggtattggtgacactattgccgaccagcagacataccatgacattcaagag
acaatccgaaaagctaagggagatgtgattgaagtgattgagaaggctcacaatgatgag
ctggaacctacaccaggtaacactctgcgtcagacctttgagaatcaggtgaacaagatc
ctgaacgatgcccgtgacaaaactggaagtacagcccagaaatcactttcagagttcaat
aacttcaaggctatggtcgttgctggatctaaggggtcaaagatcaacatttctcaggtc
attgcttgtgtgggacagcagaacgttgaaggaaaacgaatcccatttggcttcaggtac
cggacactgcctcattttataaaggatgattatgggcctgagtccagagggtttgtagaa
aactcataccttgccggtctcacaccatctgagttctacttccatgccatgggaggacgt
gaaggtctcattgatactgctgtcaagacagcagagacaggttacattcagcgtcgtctg
attaaggctatggagagtgtcatggtgaaatatgatggaacagtccggaatcaggtagag
cagctcattcagctgcgctatggtgaagatggtttagatgcctgccatgtagaattccag
agcttgccaatgttcaaaccttcaaacaaggtctttgagcgccagttcagatttgatgca
acgaatgaaagagccatgaaacggtgccttaaagaagaagtcatcaaggatctgatggga
aatgcaacaaccctggctgaattggaacgggagtgggaccagttaaaagatgatcgcatc
agcgtgcggcaggtgttctctaatggtgatgcaaaaattgttctgccatgcaaccttcag
cgcatgatctggaatgctcagaagatcttccgtatcgacaagcgcaagccctcagacctt
cacccagttaaagtagtagaaggggtccgagaactgtgcaagaggcttatggttgtggga
ggtgaagacagaattagtaaacaagccaatgagaatgccacacttctgatgaagtctctc
atccgctccacactctgctcaaagcgagtggcagaagaacaccgcttgtcagctgaggca
tttgagtggctgattggagaggttgaaacacgtttccagcaggcacaggcccacccaggt
gagatggtgggagctttggcagcacagtcacttggtgagcctgcaacacagatgacactg
aacactttccactacgctggtgtgtcagccaagaatgtcacactaggtgtgcctcgtctg
aaagagatcatcaacatctccaagaagcccaagaccccatcactggctgtctatctcctt
ggtcaggctgccagagatgctgaaaaggccaaggatgtgctttgtcgcctggagcacaca
acacttcgcaaggttactgcgaatacagccatctactatgatccagatcccatgaataca
gtcattgctgaggaccaagaatgggtgtccatttactatgagatgccagattttgatgcc
tcacgcatatcaccatggcttttacgcattgaactcgatcgtaagcgcatgacagacaag
aagcttaccatggagcagatttcagagaaaatcactgcaggatttggtgatgacttaaat
tgtatcttcaatgatgacaatgctgaaaaactggttcttcgcatccgtatcatgaattct
gaagagaacaagcttcaagaggaagaagaggttgttgataagatggaggatgatgttttt
ctccgatgcattgaagccaacttgttgtcagatatgacactgcagggcatagaagccatt
tcaaaggtgtacatgcatcttccctcaacggatgataagaagcgcattagcatcacagag
gaaggggagttcaaggctgttgctgagtggattttggagactgacggctcaagtctgatg
aaggtgttaagcgagcgggatattgaccctgtgagaacatacaccaatgacattgtggag
gttttcgctacccttggcattgaggctgtacggaaagccatagaacgtgagatgggtttc
gtcatctctttcgacggttcctatgtcaattaccgccatctggccttgctttgtgatgtc
atgacagctaaaggtcatcttatggccattactcgccatggcataaatcgtcaggagacc
ggcgccttggctcgttgctcctttgaggaaacggtggatattttaatggaggcagcagca
catgcagaagtcgatcccatgaaaggggtatctgaaaacatcatgctgggacagttggca
aagatcggaacaggctgctttgacctgctcttggatgcagaaaaatgcaagtttggcatg
gagatcccaaccaatgttggtgggggcatgatggcaggcgcaggtacaggcatgttcttt
ggagctgctngtagcccttccagtgcactttcacctcagatgacaccttggaatgcaaca
cctgcctatgccagtgcctggtcgcctggcgttggcagtggcatgacacctggggctgct
ggattctcaccatctgcagccagtgaaagtggctactcacctggatattcaccagcctgg
tctcctcaaccgggctcaccaagttctccaatttctccctacatcccatcccccnatggg
gccatgtcacccagctactcgccagcctctccatcatacattcccagctcacctgccatg
accccccagagtcctggctattctcctacatccccatcctactcgccctcaagccctggc
tactcccctacatcgcccaaatattcccctacctcacccagttactcccctaccagccca
agctattcacccacaagccccagctactctccaacaagtcctagctacagccccaccagc
ccaagctacagccccaccagtcctagctacagccctaccagccctagttatagccccacc
tccccatcttattctcccaccagccctagctacagccccacatctccatcttattcccca
accagtccctcttattctcccactagccctagctatagtccaaccagcccatcatactct
ccaaccagtccaagctactccccaacaagccccagctacagcccaacaagtccaagttat
tccccaaccagtcctagctactcccctagttcacccaactattctccatcctccccatcc
tattcacctactagccctagctacagtcctactagccccagctacagcccagcctcacct
tcctacagccccagttcacctagctactcgcctgcaagcccaagttattcacctagcagc
cctagctactcaccaagcagcccaaagtattccccaagcagccccaactacagtcccaca
agtccatcctactcgccaagctctcctcagtacagtccttcatcaccaaaatattcaccc
accagtccaagctattcaccaagcagtcccaaatattcacctacatcaccaacctacagt
ccaacatcaccccgctatagtcctgcctctcccgagtacagtccaagttcaccacagtac
agccccagttcgccgcagtattccccagcttcacctgcatattcaccagggtccaagtac
tctcctgctagtcccacctattctcccagtagccccaagtacagcccaaccagtccaaca
tataccccaacaagtcctcactactccccttcaagcccaacatacactcccaccacccca
aaatatagccccaccacaccaacatatgctgaagaaaagaaaaagaagaaaaagtaa
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integrated database retrieval system
