Pomacea canaliculata (golden apple snail): 112556451
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Entry
112556451 CDS
T05881
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112556451
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcan00536
]
112556451
Glycosaminoglycan binding proteins [BR:
pcan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112556451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
112556451
NCBI-ProteinID:
XP_025081260
LinkDB
All DBs
Position
LG2:11371889..11395538
Genome browser
AA seq
1440 aa
AA seq
DB search
MGGTWRDSALLLLAFASVVLAAPTEETAAEEGKSCFYRGEKYVDGVTWVPDEKNPCFKCV
CKNGEPFCQFEQGCETEFASAELRTAALAEALESLKGPAGQEGEMGYRGRQGDTGDIGPD
GMNGVPGPPGSPGVSDMSADQAYQTYFARNYGGKAAPAYGPQYLQAQVGPMGPRGTAGPP
GSAGPQGVEGPRGDPGDPGPPGPPGSRGEPGTSGPPGPEGDAGRNGEPGAQGPPGPKGPA
GAPGMPGLPGQKGHQGFAGFPGKRGEQGPGGEIGDTGPAGPAGPAGPQGPRGAPGDRGED
GPSGLDGLRGVDGLPGQPGPPGPVGPSGPPGIPGQIGLKGEAGAAGPKGSQGPQGARGEN
GMPGITGEVGLPGPPGLSGSPGEQGATGDPGPVGQPGYPGARGEPGPVGSPGPSGPKGSS
GIPGQDGYKGTAGEKGQTGPAGDQGSPGPPGPQGRRGQGGAPGPQGPPGSQGERGLPGDR
GIPGSAGAPGPKGEDGEPGARGPRGEAGATGETGTSGPPGPPGEVGPPGLPGPDGNSGKP
GEPGPSGTNGRPGEMGPPGQPGPQGIQGPQGVSGERGPPGKDGTPGTTGPRGPPGDSGST
GEPGPPGQRGPEGEAGPRGPQGSSGPPGPQGPIGLPGAQGEAGRDGEAGPPGEAGVSGAP
GYRGERGLPGDRGPPGPEGEPGLPGSGGPAGPDGNRGSPGEIGVQGEPGPQGPIGPNGER
GPPGPPGDKGEAGEGGPTGPDGLTGRPGRPGPRGQPGPEGLAGPPAAKGFPGDAGLRGQA
GPAGSPGPRGEAGPEGEQGYPGLPGQAGSPGPKGQTGPAGSKGEAGEAGSPGESGRTGPT
GLPGIPGRRGPSGDRGVQGVPGEIGAQGRPGLQGPTGSVGDPGPAGAAGPAGIKGSMGET
GRQGRPGPSGAPGVPGVPGNKGSRGEDGIPGSSGPNGPPGPQGQRGEPGIPGVPGETGPQ
GSVGATGRRGSPGRRGSDGLPGPQGEAGIPGPNGNPGAPGSPGARGNNGAPGAQGAEGEP
GIPGELGLPGAPGLPGLQGAAGPAGPSGPAGERGPRGEVGPDGPRGPAGGRGGPGPQGPI
GEAGARGEDGEQGDKGDPGYGGLPGLPGPEGPLGEPGRPGPRGPPGSQGPDGPRGQPGPD
GEQGPEGPQGPPGPRGSAGEDGRRGASGDIGLEGPPGPPGQNMYQSAITGWFQGGSKGPD
PYLADAPEEARDTVKALKEVADEIEKLRKPTGKRDSPARTCLELAKADPTLKSGFYWVDP
NAGGVSDAIRVFCKMEGDNTETCLEPQEEFSNQRWSSEKIDTQGRLWFAEAFAANNEFDY
GSHKSQIKFLQHLTTFARQRIVINCKNTAIIFDNEGNNYDKAISLASFDEENMSVHSKMP
FRYRVMEDGCKEKNGQWGRAVIEIRGKKARAQRVPIMDIGFLDNGADAEFGVKVGRACFS
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaacctggagggattcagcgcttttgctgctcgccttcgcctccgtggtcttg
gcagcacccaccgaggagactgctgcagaggagggcaagtcctgtttctacaggggagag
aaatacgtcgatggtgtgacatgggtaccggatgagaagaacccatgtttcaagtgtgtg
tgcaaaaatggcgagcctttctgtcagtttgaacaaggatgtgagaccgaatttgcatct
gctgagctgaggacagcagctctggccgaggccctggaatctttaaagggtcctgctggg
caagagggagagatgggctacagaggtcgccaaggtgacactggcgatattggaccagat
ggcatgaacggagttcccggacccccggggtctccaggtgtcagtgacatgagcgctgat
caggcctaccaaacatacttcgcaagaaactatggtggcaaggcagcacccgcttatggt
cctcagtacctccaggcccaagtgggacctatgggaccccgtggaacagcaggcccacct
ggatcagctggacctcaaggtgtggagggacctcgtggtgaccctggtgaccccggtcca
cctggtccccctgggtcacgtggtgagcccggtacatctggcccaccaggtccagaggga
gacgctgggcgaaatggtgaaccaggagcacaaggtccacctggaccaaagggaccagcc
ggtgccccaggaatgcccggcctgccaggtcagaagggtcatcagggctttgctggcttt
cctggaaaacgcggagagcaaggacctggtggagaaataggagatactggacccgctgga
ccagccggccccgccggacctcagggaccccggggtgcacctggtgaccgtggagaagat
ggaccctcaggtcttgatggccttcgtggagtagacggtctgcctggacaacccggtcca
ccaggtcctgtgggaccctcaggacctcccggcattcctggtcaaataggcctgaaggga
gaagctggtgctgctggacctaagggtagccagggtcctcagggtgctcgtggtgagaac
ggtatgccgggtatcacgggagaggtgggcttgccaggaccccccggtctatccggctct
cctggagagcagggagccactggtgatccaggccctgttggtcagcccggttatcccggt
gccagaggagagcctggtcccgttggaagcccaggaccttctggacccaagggatcctcg
ggtatccctggccaagacggttacaaaggcactgccggagagaagggacagactggacca
gctggcgaccagggaagtccaggtcccccaggacctcaaggacgccgaggacaaggcggt
gctcctggaccacagggtcctcctggatctcagggagagcgaggtctgccaggagatcga
ggtatacctggttctgcaggcgcacctggaccaaagggagaggacggagaacccggtgct
cgaggaccacgaggagaagctggagccacgggcgagacaggaacgtctggaccaccaggc
ccacctggagaagtaggcccaccaggtctaccaggtcccgatggtaacagcggcaaacct
ggagagccgggtccaagcgggacaaatggccgaccaggtgagatgggaccaccagggcag
ccaggacctcaaggaattcaaggaccacagggtgtatctggcgagagaggacccccaggg
aaggatggaactcctggaacaacaggcccacgaggccctcctggtgattcgggatctacc
ggtgagcctggtccacctggccagcgtggtcctgagggtgaagcaggtcccagaggaccg
caaggttcatctggacctcccggacctcagggcccaataggtcttcccggagcacaagga
gaagctgggcgagacggagaggctggtccacctggcgaagctggagtttctggtgcccct
ggatatcggggagagcgaggtctgcccggtgaccgcggccctccaggaccagaaggtgag
cctggactgcctggttcaggaggacccgctggaccagatggcaacagaggctcccctggc
gagattggtgttcaaggagagcctggacctcaaggacctattggacccaatggagaacgt
ggacctccaggcccaccaggtgacaaaggagaagctggagagggaggaccaaccggacca
gatggtctaacaggtaggccaggccgacccggaccacgtggtcaacccggtcctgagggt
cttgcaggcccacctgcagccaaaggcttccctggagatgctggtctgagaggacaggct
ggcccagctggatcacctggaccaagaggcgaggctggaccggaaggagaacagggctac
ccaggcttacctggccaagctggatccccaggtcctaagggtcagactggtccagcaggc
tccaagggagaggctggagaagcaggttccccaggagagtccggacgtaccggccccaca
ggacttcctggaattcccggacgcagaggaccatctggagaccgtggtgttcaaggtgtc
cctggtgagataggtgctcaggggcgacctggtcttcaaggccctacaggcagcgttggc
gatccaggacctgctggtgccgcgggacccgcaggaattaagggatccatgggcgagaca
ggtcgacagggacgtcctggtccatctggagccccaggtgtgcctggtgtacccggcaac
aagggcagtcgcggagaagacggaatacccggatccagcggcccgaatggcccacccgga
ccacagggtcagcgcggagagccaggaatacccggcgtgcctggagaaacgggaccccaa
gggtctgttggtgctactggtcgtcgcggctcacctggcagacgaggcagcgatggatta
cctggtcctcagggtgaagcaggaatacctggtccaaacggtaaccctggagctcccgga
agcccaggcgcacgcggcaacaacggagcaccaggagctcaaggcgctgagggagaacca
ggtattcctggagagctaggtctgcctggagctcctggtcttcctggactgcagggtgct
gctggtcctgcaggaccttctggacctgctggagagcgtggacctaggggtgaagtcggc
ccagatggtccacgaggacctgccggcggaaggggaggccccggaccgcaaggacctatc
ggcgaggcaggagccagaggtgaggacggtgaacaaggtgataagggtgaccccggctat
ggaggcttgcctggtctgcctggaccagaggggccactcggtgaacctggacgtccggga
ccacgtggtccaccaggcagccagggacctgatggccccagaggtcagcccggtccagat
ggagagcaaggacctgagggaccacagggtcctcccggtccacgaggttccgccggtgaa
gacggccgtaggggcgcatctggtgatattggactcgagggacctccaggtccaccaggt
cagaacatgtaccaaagcgctatcaccggctggttccagggaggttcaaagggacccgat
ccttaccttgccgatgctcctgaagaggcacgtgacaccgtgaaggcgctgaaggaagtg
gccgatgagatcgagaagcttcgaaagccaaccggcaagcgtgactctcctgctcgcacg
tgtctggagcttgccaaggccgaccccactctcaagagcgggttctactgggtggatcca
aatgctggaggagtcagcgatgctattcgcgtcttctgcaagatggaaggagataacacc
gagacatgtctggagccacaggaagagttctccaaccaaagatggagctccgagaaaatt
gacacccaaggccgtttgtggtttgccgaagcatttgcagcaaacaatgagtttgactat
ggaagccacaagtcccagatcaagttcctgcagcatctgaccacattcgccagacagcgc
atcgttatcaactgcaagaacaccgcaatcatcttcgataacgagggcaacaactacgac
aaagccatatctctcgcaagcttcgacgaagagaacatgagtgtccacagcaagatgccc
ttccgataccgagtgatggaggacggctgcaaggagaagaacggccaatggggtagagct
gtcatcgaaatacgaggcaaaaaggcacgcgcccagcgtgtacccatcatggacatcggt
ttccttgacaacggcgcggacgccgagtttggcgtgaaagtgggtcgtgcgtgcttcagt
tga
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